RNA–Protein interactions for RNA: ENST00000589882.1

TREM1-206, Transcript of triggering receptor expressed on myeloid cells 1, human

Gene TREM1, Length 1,876 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TREM1-206	ENST00000589882	CCAR1	Q8IX12	1150 aa	Known RBP	13.57	□□□□□ -0.24
TREM1-206	ENST00000589882	RASEF	Q8IZ41	740 aa		13.57	□□□□□ -0.24
TREM1-206	ENST00000589882	KCNB2	Q92953	911 aa		13.57	□□□□□ -0.24
TREM1-206	ENST00000589882	JAKMIP1	Q96N16	626 aa	Known RBP	13.57	□□□□□ -0.24
TREM1-206	ENST00000589882	PPP2R2C	Q9Y2T4	447 aa		13.57	□□□□□ -0.24
TREM1-206	ENST00000589882	SHTN1	A0MZ66	631 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	SCRN1	Q12765	414 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	SF3B2	Q13435	895 aa	Known RBP	13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	CASP8	Q14790	479 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	ME3	Q16798	604 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	PREPL	Q4J6C6	727 aa	Predicted RBP	13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	FAXDC2	Q96IV6	333 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	JPH2	Q9BR39	696 aa	Predicted RBP	13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	PLCD4	Q9BRC7	762 aa		13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	LARP6	Q9BRS8	491 aa	Known RBP	13.56	□□□□□ -0.24
TREM1-206	ENST00000589882	MYO1B	O43795	1136 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	NEBL	O76041	1014 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	ZKSCAN1	P17029	563 aa	Predicted RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	FAM160A1	Q05DH4	1040 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	ST3GAL1	Q11201	340 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	NBPF6	Q5VWK0	638 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	ATL3	Q6DD88	541 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	TICAM2	Q86XR7	235 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	AMOTL1	Q8IY63	956 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	CNTROB	Q8N137	903 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	NBPF4	Q96M43	638 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	RIMS2	Q9UQ26	1411 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	KIF1B	O60333	1816 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882		A0A1B0GUA9	196 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	IRF6	O14896	467 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	FANCG	O15287	622 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	N4BP1	O75113	896 aa	Known RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	PSMA5	P28066	241 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	MRPL12	P52815	198 aa	Known RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	KIF4B	Q2VIQ3	1234 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	PLEKHO1	Q53GL0	409 aa	Predicted RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	FAM173B	Q6P4H8	233 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	N4BP2L2	Q92802	583 aa	Predicted RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	KIFC2	Q96AC6	838 aa		13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	TRIM6	Q9C030	488 aa	Predicted RBP	13.55	□□□□□ -0.24
TREM1-206	ENST00000589882	DEPDC5	O75140	1603 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	CUTA	O60888	179 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	RNF40	O75150	1001 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	MCM3	P25205	808 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	KRT24	Q2M2I5	525 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	FBXW10	Q5XX13	1052 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	CPLX2	Q6PUV4	134 aa	Known RBP	13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	B4GALNT4	Q76KP1	1039 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	SMARCC1	Q92922	1105 aa	Predicted RBP	13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	FAM210A	Q96ND0	272 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	ANKZF1	Q9H8Y5	726 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	STK26	Q9P289	416 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	RPGRIP1L	Q68CZ1	1315 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882	ADCY9	O60503	1353 aa		13.54	□□□□□ -0.24
TREM1-206	ENST00000589882		A6NNZ2	444 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	REST	Q13127	1097 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	TUBB8	Q3ZCM7	444 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	UNC5CL	Q8IV45	518 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	DHX58	Q96C10	678 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	WDR24	Q96S15	920 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	THUMPD2	Q9BTF0	503 aa	Known RBP	13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	ABCB6	Q9NP58	842 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	SETD1A	O15047	1707 aa	Known RBP	13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	IKBKB	O14920	756 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	KIAA0754	O94854	1291 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	FSBP	O95073	299 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	NECAB1	Q8N987	351 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	ITFG2	Q969R8	447 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	SIGLEC1	Q9BZZ2	1709 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	NBPF3	Q9H094	633 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	IL25	Q9H293	177 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	TULP4	Q9NRJ4	1543 aa		13.53	□□□□□ -0.24
TREM1-206	ENST00000589882	RIMS1	Q86UR5	1692 aa	Known RBP	13.52	□□□□□ -0.25
TREM1-206	ENST00000589882		A0A1W2PP64	1363 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	ANKRD33B	A6NCL7	494 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	WDHD1	O75717	1129 aa	Predicted RBP	13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	ARHGAP25	P42331	645 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	CCT5	P48643	541 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	ICA1	Q05084	483 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	LARP1	Q6PKG0	1096 aa	Known RBP	13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	ANKRD18A	Q8IVF6	992 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	TERF2IP	Q9NYB0	399 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	RCOR1	Q9UKL0	485 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	ODF2L	Q9ULJ1	636 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	TPCN1	Q9ULQ1	816 aa		13.52	□□□□□ -0.25
TREM1-206	ENST00000589882	TTC36	A6NLP5	189 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	RAB11FIP3	O75154	756 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	FANCC	Q00597	558 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	SEMA3F	Q13275	785 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	AP1AR	Q63HQ0	302 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	CCDC50	Q8IVM0	306 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	ZKSCAN4	Q969J2	545 aa	Predicted RBP	13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	ZNF396	Q96N95	335 aa	Predicted RBP	13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	GGNBP2	Q9H3C7	697 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	PLEKHA4	Q9H4M7	779 aa		13.51	□□□□□ -0.25
TREM1-206	ENST00000589882	CDC23	Q9UJX2	597 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms