RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 EYA3Q99504 573 aa13.22□□□□□ -0.29
SMARCA4-213ENST00000587988 MED23Q9ULK4 1368 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 A0A1B0GUL7 405 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 SLC5A1P13866 664 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 LMNB1P20700 586 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 ADORA1P30542 326 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 GYG1P46976 350 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 TNNI3KQ59H18 835 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 C9orf131Q5VYM1 1079 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 C15orf52Q6ZUT6 534 aaKnown RBP13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 LARGE2Q8N3Y3 721 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 EAF2Q96CJ1 260 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 FAM84BQ96KN1 310 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 ZC3H12CQ9C0D7 883 aaKnown RBP13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 BCL11AQ9H165 835 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 VPS33BQ9H267 617 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 DBNDD1Q9H9R9 158 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 AKAP2Q9Y2D5 859 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 FPGT-TNNI3KV9GXZ4 949 aa13.21□□□□□ -0.29
SMARCA4-213ENST00000587988 ZNF609O15014 1411 aa13.21□□□□□ -0.3
SMARCA4-213ENST00000587988 DICER1Q9UPY3 1922 aaKnown RBP13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 IFIT1P09914 478 aaKnown RBP13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 SMC5Q8IY18 1101 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 GCC1Q96CN9 775 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 XAGE2Q96GT9 111 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 NEUROD6Q96NK8 337 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 LRRCC1Q9C099 1032 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 CCDC8Q9H0W5 538 aaPredicted RBP13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 GPR108Q9NPR9 543 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 RNF181Q9P0P0 153 aa13.2□□□□□ -0.3
SMARCA4-213ENST00000587988 YDJCA8MPS7 323 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 BCAMP50895 628 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 ERICH6BQ5W0A0 696 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 B4GALNT3Q6L9W6 998 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 FBXO33Q7Z6M2 555 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 DBNDD2Q9BQY9 259 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 KCNQ5Q9NR82 932 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 TLR7Q9NYK1 1049 aaKnown RBP13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 CHD4Q14839 1912 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 ARAP2Q8WZ64 1704 aa13.19□□□□□ -0.3
SMARCA4-213ENST00000587988 ECE2O60344 883 aa13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 HIBADHP31937 336 aaKnown RBP13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 ANKRD45Q5TZF3 282 aa13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 AACSQ86V21 672 aa13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 NIM1KQ8IY84 436 aa13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 CLASRPQ8N2M8 674 aaKnown RBP13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 CD209Q9NNX6 404 aa13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 DBNLQ9UJU6 430 aaKnown RBP13.18□□□□□ -0.3
SMARCA4-213ENST00000587988 G3V3G9 751 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 PHKA1P46020 1223 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 CAVIN4Q5BKX8 364 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 DCAF8Q5TAQ9 597 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 CCDC102BQ68D86 513 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 ZNF804AQ7Z570 1209 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 C16orf71Q8IYS4 520 aaPredicted RBP13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 JDP2Q8WYK2 163 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 COA1Q9GZY4 146 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 IQSEC3Q9UPP2 1182 aaPredicted RBP13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 SCN9AQ15858 1988 aa13.17□□□□□ -0.3
SMARCA4-213ENST00000587988 TIAM2Q8IVF5 1701 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 KDM2BQ8NHM5 1336 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 FZD9O00144 591 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 IL1R1P14778 569 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 VPS37DQ86XT2 251 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 TDRD7Q8NHU6 1098 aaKnown RBP13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 PPP4R2Q9NY27 417 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 ZNRF3Q9ULT6 936 aa13.16□□□□□ -0.3
SMARCA4-213ENST00000587988 ZNF541Q9H0D2 1346 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 IFIT2P09913 472 aaKnown RBP13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 NUCB1Q02818 461 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 CXCL9Q07325 125 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 GORABQ5T7V8 394 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 PODNQ7Z5L7 613 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 OTUD7AQ8TE49 926 aaPredicted RBP13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 LNPKQ9C0E8 428 aa13.15□□□□□ -0.3
SMARCA4-213ENST00000587988 RAD17O75943 681 aa13.14□□□□□ -0.31
SMARCA4-213ENST00000587988 CHD1LQ86WJ1 897 aa13.14□□□□□ -0.31
SMARCA4-213ENST00000587988 JAG2Q9Y219 1238 aa13.14□□□□□ -0.31
SMARCA4-213ENST00000587988 ZNF646O15015 1829 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 COL1A1P02452 1464 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 PSMD14O00487 310 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 EIF6P56537 245 aaKnown RBP13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 GTF2IP78347 998 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 SCARF1Q14162 830 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 CCDC158Q5M9N0 1113 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 TTC39AQ5SRH9 613 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 CENPQQ7L2Z9 268 aaPredicted RBP13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 FBXW7Q969H0 707 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 MXD3Q9BW11 206 aa13.13□□□□□ -0.31
SMARCA4-213ENST00000587988 PSME4Q14997 1843 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 USP17L3A6NCW0 530 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 USP17L4A6NCW7 530 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 FRAT2O75474 233 aaPredicted RBP13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 ARID4AP29374 1257 aaPredicted RBP13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 MCAMP43121 646 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 CHAF1AQ13111 956 aaPredicted RBP13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 RASGRF1Q13972 1273 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 TSHZ3Q63HK5 1081 aa13.12□□□□□ -0.31
SMARCA4-213ENST00000587988 TTLL5Q6EMB2 1281 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms