RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 RTCBQ9Y3I0 505 aaKnown RBP13.58□□□□□ -0.24
SS18-221ENST00000582448 PHKG2P15735 406 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 FSHRP23945 695 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 ZBTB33Q86T24 672 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 MTMR14Q8NCE2 650 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 ADAM32Q8TC27 787 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 GPSM3Q9Y4H4 160 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 TAF1LQ8IZX4 1826 aa13.57□□□□□ -0.24
SS18-221ENST00000582448 TOMM70O94826 608 aa13.56□□□□□ -0.24
SS18-221ENST00000582448 DPEP1P16444 411 aa13.56□□□□□ -0.24
SS18-221ENST00000582448 TNNT2P45379 298 aaPredicted RBP13.56□□□□□ -0.24
SS18-221ENST00000582448 TGFB2P61812 414 aa13.56□□□□□ -0.24
SS18-221ENST00000582448 NLGN1Q8N2Q7 840 aa13.56□□□□□ -0.24
SS18-221ENST00000582448 NMRK2Q9NPI5 230 aa13.56□□□□□ -0.24
SS18-221ENST00000582448 RFC4P35249 363 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
SS18-221ENST00000582448 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
SS18-221ENST00000582448 ITPKCQ96DU7 683 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 ZFAND3Q9H8U3 227 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 CCDC87Q9NVE4 849 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 PARP3Q9Y6F1 533 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 ITGB4P16144 1822 aa13.55□□□□□ -0.24
SS18-221ENST00000582448 HTRA3P83110 453 aa13.54□□□□□ -0.24
SS18-221ENST00000582448 PNMA1Q8ND90 353 aa13.54□□□□□ -0.24
SS18-221ENST00000582448 NPC1L1Q9UHC9 1359 aa13.54□□□□□ -0.24
SS18-221ENST00000582448 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 UBR3Q6ZT12 1888 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 GPR37L1O60883 481 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 ZIC2O95409 532 aaPredicted RBP13.53□□□□□ -0.24
SS18-221ENST00000582448 SNRPBP14678 240 aaKnown RBP13.53□□□□□ -0.24
SS18-221ENST00000582448 C9orf131Q5VYM1 1079 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 FAM9BQ8IZU0 186 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 DNAJC5GQ8N7S2 189 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 ZNF775Q96BV0 537 aaPredicted RBP13.53□□□□□ -0.24
SS18-221ENST00000582448 SLC10A4Q96EP9 437 aa13.53□□□□□ -0.24
SS18-221ENST00000582448 GYS1P13807 737 aa13.52□□□□□ -0.25
SS18-221ENST00000582448 SLC4A9Q96Q91 983 aa13.52□□□□□ -0.25
SS18-221ENST00000582448 POLKQ9UBT6 870 aa13.52□□□□□ -0.25
SS18-221ENST00000582448 PXDNLA1KZ92 1463 aa13.52□□□□□ -0.25
SS18-221ENST00000582448 PTCD1O75127 700 aaKnown RBP13.51□□□□□ -0.25
SS18-221ENST00000582448 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
SS18-221ENST00000582448 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
SS18-221ENST00000582448 EIF4A2Q14240 407 aaKnown RBP13.51□□□□□ -0.25
SS18-221ENST00000582448 TRIM47Q96LD4 638 aa13.51□□□□□ -0.25
SS18-221ENST00000582448 KCTD15Q96SI1 283 aaPredicted RBP13.51□□□□□ -0.25
SS18-221ENST00000582448 CABP4P57796 275 aa13.5□□□□□ -0.25
SS18-221ENST00000582448 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
SS18-221ENST00000582448 CICQ96RK0 1608 aaPredicted RBP13.5□□□□□ -0.25
SS18-221ENST00000582448 ERVV-2B6SEH9 535 aa13.49□□□□□ -0.25
SS18-221ENST00000582448 PLEKHO1Q53GL0 409 aaPredicted RBP13.49□□□□□ -0.25
SS18-221ENST00000582448 CCDC116Q8IYX3 515 aa13.49□□□□□ -0.25
SS18-221ENST00000582448 RRAGCQ9HB90 399 aa13.49□□□□□ -0.25
SS18-221ENST00000582448 RNF181Q9P0P0 153 aa13.49□□□□□ -0.25
SS18-221ENST00000582448 SRP68Q9UHB9 627 aaKnown RBP13.49□□□□□ -0.25
SS18-221ENST00000582448 MAP2P11137 1827 aaKnown RBP13.48□□□□□ -0.25
SS18-221ENST00000582448 KIF20BQ96Q89 1820 aa13.48□□□□□ -0.25
SS18-221ENST00000582448 N4BP2Q86UW6 1770 aaPredicted RBP13.48□□□□□ -0.25
SS18-221ENST00000582448 HSP90AB1P08238 724 aaKnown RBP13.48□□□□□ -0.25
SS18-221ENST00000582448 KCNA3P22001 575 aa13.48□□□□□ -0.25
SS18-221ENST00000582448 CCDC184Q52MB2 194 aa13.48□□□□□ -0.25
SS18-221ENST00000582448 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
SS18-221ENST00000582448 ZNF530Q6P9A1 599 aaPredicted RBP13.48□□□□□ -0.25
SS18-221ENST00000582448 DCAF5Q96JK2 942 aa13.48□□□□□ -0.25
SS18-221ENST00000582448 SENP2Q9HC62 589 aa13.48□□□□□ -0.25
SS18-221ENST00000582448 PKD1L3Q7Z443 1732 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 FBXO45P0C2W1 286 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 CHRNA5P30532 468 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 MTHFSP49914 203 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 MRPL14Q6P1L8 145 aaKnown RBP13.47□□□□□ -0.25
SS18-221ENST00000582448 CDV3Q9UKY7 258 aaKnown RBP13.47□□□□□ -0.25
SS18-221ENST00000582448 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 C10orf71Q711Q0 1435 aa13.47□□□□□ -0.25
SS18-221ENST00000582448 KDM2BQ8NHM5 1336 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 CNTNAP4Q9C0A0 1308 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 ZBBXA8MT70 800 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 CRKLP46109 303 aaKnown RBP13.46□□□□□ -0.25
SS18-221ENST00000582448 INTS6LQ5JSJ4 861 aaKnown RBP13.46□□□□□ -0.25
SS18-221ENST00000582448 C1orf141Q5JVX7 400 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 PPP1R26Q5T8A7 1209 aaPredicted RBP13.46□□□□□ -0.25
SS18-221ENST00000582448 COL13A1Q5TAT6 717 aaPredicted RBP13.46□□□□□ -0.25
SS18-221ENST00000582448 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 KLRG1Q96E93 195 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 ZFP42Q96MM3 310 aa13.46□□□□□ -0.25
SS18-221ENST00000582448 NFATC2IPQ8NCF5 419 aa13.45□□□□□ -0.26
SS18-221ENST00000582448 PNISRQ8TF01 805 aaKnown RBP13.45□□□□□ -0.26
SS18-221ENST00000582448 NDUFB9Q9Y6M9 179 aa13.45□□□□□ -0.26
SS18-221ENST00000582448 KDRP35968 1356 aa13.45□□□□□ -0.26
SS18-221ENST00000582448 PPP2R1AP30153 589 aa13.44□□□□□ -0.26
SS18-221ENST00000582448 FSTL1Q12841 308 aa13.44□□□□□ -0.26
SS18-221ENST00000582448 DZIP3Q86Y13 1208 aaKnown RBP13.44□□□□□ -0.26
SS18-221ENST00000582448 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
SS18-221ENST00000582448 DDR1Q08345 913 aa13.43□□□□□ -0.26
SS18-221ENST00000582448 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
SS18-221ENST00000582448 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
SS18-221ENST00000582448 KIFC2Q96AC6 838 aa13.43□□□□□ -0.26
SS18-221ENST00000582448 PURBQ96QR8 312 aaKnown RBP13.43□□□□□ -0.26
SS18-221ENST00000582448 RASSF7Q02833 373 aa13.42□□□□□ -0.26
SS18-221ENST00000582448 USPL1Q5W0Q7 1092 aa13.42□□□□□ -0.26
SS18-221ENST00000582448 AEBP1Q8IUX7 1158 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms