RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 DOCK2Q92608 1830 aa12.74□□□□□ -0.37
SS18-217ENST00000580958 RFX7Q2KHR2 1363 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 TAF5LO75529 589 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 SLC5A1P13866 664 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 FGFR2P21802 821 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 CHRNDQ07001 517 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 DDR1Q08345 913 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 COL23A1Q86Y22 540 aaPredicted RBP12.73□□□□□ -0.37
SS18-217ENST00000580958 CELF1Q92879 486 aaKnown RBP12.73□□□□□ -0.37
SS18-217ENST00000580958 PAG1Q9NWQ8 432 aa12.73□□□□□ -0.37
SS18-217ENST00000580958 DAXXQ9UER7 740 aaPredicted RBP12.73□□□□□ -0.37
SS18-217ENST00000580958 CACNA1SQ13698 1873 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 GOLIM4O00461 696 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 SERPINB2P05120 415 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 LPIN2Q92539 896 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 FAM227BQ96M60 508 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 LSG1Q9H089 658 aaKnown RBP12.72□□□□□ -0.37
SS18-217ENST00000580958 SNRKQ9NRH2 765 aa12.72□□□□□ -0.37
SS18-217ENST00000580958 RAD50Q92878 1312 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 A0A0D9SFI3 127 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 SNAP23O00161 211 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 MCCP23508 829 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 ST5P78524 1137 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 EN1Q05925 392 aaPredicted RBP12.71□□□□□ -0.37
SS18-217ENST00000580958 SCARF1Q14162 830 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 EZH2Q15910 746 aaKnown RBP12.71□□□□□ -0.37
SS18-217ENST00000580958 ERICH6Q7L0X2 663 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 KBTBD3Q8NAB2 608 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 FLAD1Q8NFF5 587 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 CAMKK2Q96RR4 588 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 TBC1D2Q9BYX2 928 aa12.71□□□□□ -0.37
SS18-217ENST00000580958 BSDC1Q9NW68 430 aaPredicted RBP12.71□□□□□ -0.37
SS18-217ENST00000580958 PNPLA7Q6ZV29 1317 aa12.7□□□□□ -0.38
SS18-217ENST00000580958 POLRMTO00411 1230 aaKnown RBP12.7□□□□□ -0.38
SS18-217ENST00000580958 EPB41L2O43491 1005 aaKnown RBP12.7□□□□□ -0.38
SS18-217ENST00000580958 PHKA1P46020 1223 aa12.7□□□□□ -0.38
SS18-217ENST00000580958 RPS8P62241 208 aaKnown RBP12.7□□□□□ -0.38
SS18-217ENST00000580958 FKBP4Q02790 459 aaKnown RBP eCLIP12.7□□□□□ -0.38
SS18-217ENST00000580958 RABEP1Q15276 862 aa12.7□□□□□ -0.38
SS18-217ENST00000580958 KIAA1211Q6ZU35 1233 aa12.7□□□□□ -0.38
SS18-217ENST00000580958 ANTXR1Q9H6X2 564 aa12.7□□□□□ -0.38
SS18-217ENST00000580958 COL11A2P13942 1736 aaPredicted RBP12.7□□□□□ -0.38
SS18-217ENST00000580958 MED23Q9ULK4 1368 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 CHGBP05060 677 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 UQCRFS1P1P0C7P4 283 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 ARID4AP29374 1257 aaPredicted RBP12.69□□□□□ -0.38
SS18-217ENST00000580958 MCAMP43121 646 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 ZAP70P43403 619 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 PTH1RQ03431 593 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 CCDC102BQ68D86 513 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 PI16Q6UXB8 463 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 HSCBQ8IWL3 235 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 ZNF512BQ96KM6 892 aaPredicted RBP12.69□□□□□ -0.38
SS18-217ENST00000580958 PALD1Q9ULE6 856 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 MINPP1Q9UNW1 487 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 LAMA4Q16363 1823 aa12.69□□□□□ -0.38
SS18-217ENST00000580958 LRRC37AA6NMS7 1700 aa12.68□□□□□ -0.38
SS18-217ENST00000580958 CCDC171Q6TFL3 1326 aa12.68□□□□□ -0.38
SS18-217ENST00000580958 NLGN1Q8N2Q7 840 aa12.68□□□□□ -0.38
SS18-217ENST00000580958 SNX21Q969T3 373 aa12.68□□□□□ -0.38
SS18-217ENST00000580958 ANO8Q9HCE9 1232 aaPredicted RBP12.68□□□□□ -0.38
SS18-217ENST00000580958 RNF113AO15541 343 aaKnown RBP12.67□□□□□ -0.38
SS18-217ENST00000580958 HSPA4P34932 840 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 GRAPQ13588 217 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 UBE4AQ14139 1066 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 SLC15A2Q16348 729 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 SLFNL1Q499Z3 407 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 CCDC129Q6ZRS4 1044 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 ZNF589Q86UQ0 364 aaPredicted RBP12.67□□□□□ -0.38
SS18-217ENST00000580958 GRAPLQ8TC17 118 aaPredicted RBP12.67□□□□□ -0.38
SS18-217ENST00000580958 RPGRQ92834 1020 aaKnown RBP12.67□□□□□ -0.38
SS18-217ENST00000580958 DCBLD2Q96PD2 775 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 SEC62Q99442 399 aaKnown RBP12.67□□□□□ -0.38
SS18-217ENST00000580958 STK32BQ9NY57 414 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 CCDC88AQ3V6T2 1871 aa12.67□□□□□ -0.38
SS18-217ENST00000580958 WTIPA6NIX2 430 aaPredicted RBP12.66□□□□□ -0.38
SS18-217ENST00000580958 CD2BP2O95400 341 aaKnown RBP12.66□□□□□ -0.38
SS18-217ENST00000580958 BAG6P46379 1132 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 BCAMP50895 628 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 ANAPC15P60006 121 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 SF3B2Q13435 895 aaKnown RBP12.66□□□□□ -0.38
SS18-217ENST00000580958 MCMDC2Q4G0Z9 681 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 ZMYM1Q5SVZ6 1142 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 MSL1Q68DK7 614 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 TICAM2Q86XR7 235 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 ANKRD2Q9GZV1 360 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 HELLSQ9NRZ9 838 aa12.66□□□□□ -0.38
SS18-217ENST00000580958 CYP2E1P05181 493 aaPredicted RBP12.65□□□□□ -0.38
SS18-217ENST00000580958 KCNJ4P48050 445 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 LRRFIP1Q32MZ4 808 aaKnown RBP12.65□□□□□ -0.38
SS18-217ENST00000580958 CRY2Q49AN0 593 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 LHX8Q68G74 356 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 DEFB132Q7Z7B7 95 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 IL17RAQ96F46 866 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 RBM17Q96I25 401 aaKnown RBP12.65□□□□□ -0.38
SS18-217ENST00000580958 PIH1D3Q9NQM4 214 aaKnown RBP12.65□□□□□ -0.38
SS18-217ENST00000580958 HMG20BQ9P0W2 317 aa12.65□□□□□ -0.38
SS18-217ENST00000580958 RBM8AQ9Y5S9 174 aaKnown RBP12.65□□□□□ -0.38
SS18-217ENST00000580958 SNX14Q9Y5W7 946 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms