RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 MYH3P11055 1940 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 LDLRAD1Q5T700 205 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 ANKRD13DQ6ZTN6 518 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 ARMC9Q7Z3E5 817 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 IFNL1Q8IU54 200 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 ARMC5Q96C12 935 aa12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 ANGEL1Q9UNK9 670 aaKnown RBP12.13□□□□□ -0.47
SMARCD2-208ENST00000580054 XDHP47989 1333 aa12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 RANBP2P49792 3224 aaKnown RBP12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 ALDH1A1P00352 501 aa12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 DACT2Q5SW24 774 aa12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 JARID2Q92833 1246 aaPredicted RBP12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 FBXW7Q969H0 707 aa12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 CLMNQ96JQ2 1002 aa12.12□□□□□ -0.47
SMARCD2-208ENST00000580054 MANSC4A6NHS7 340 aaPredicted RBP12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 RIPK4P57078 832 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 CRHR2Q13324 411 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 HDGFL1Q5TGJ6 251 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 PODNQ7Z5L7 613 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 ERO1AQ96HE7 468 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 WNK4Q96J92 1243 aa12.11□□□□□ -0.47
SMARCD2-208ENST00000580054 MED23Q9ULK4 1368 aa12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 H0YGN5 161 aa12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 ATP2B4P23634 1241 aa12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 APOBEC3FQ8IUX4 373 aaKnown RBP12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 ZBTB38Q8NAP3 1195 aaPredicted RBP12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 BABAM1Q9NWV8 329 aa12.1□□□□□ -0.47
SMARCD2-208ENST00000580054 CUL9Q8IWT3 2517 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 GJA5P36382 358 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 TRIM28Q13263 835 aaKnown RBP12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 CCDC152Q4G0S7 254 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 OGFOD1Q8N543 542 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 OTUD5Q96G74 571 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 ZNF333Q96JL9 665 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 EFCC1Q9HA90 598 aa12.09□□□□□ -0.47
SMARCD2-208ENST00000580054 COL1A1P02452 1464 aaPredicted RBP12.08□□□□□ -0.47
SMARCD2-208ENST00000580054 MYCP01106 439 aaPredicted RBP12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 TXNRD3Q86VQ6 643 aa12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 KIAA0825Q8IV33 1275 aa12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 ANKRD18AQ8IVF6 992 aa12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 ZBED3Q96IU2 234 aaPredicted RBP12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 PNNQ9H307 717 aaKnown RBP12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 MYO3BQ8WXR4 1341 aa12.08□□□□□ -0.48
SMARCD2-208ENST00000580054 COL6A3P12111 3177 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 CHL1O00533 1208 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 ZBTB48P10074 688 aaPredicted RBP12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 KLRK1P26718 216 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 TMPOP42166 694 aaKnown RBP12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 MAP3K11Q16584 847 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 STRIP1Q5VSL9 837 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 CHRDL2Q6WN34 429 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 SLC10A4Q96EP9 437 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 MYD88Q99836 296 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 PTPN18Q99952 460 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 TMEM106CQ9BVX2 250 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 DBF4Q9UBU7 674 aaPredicted RBP12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 LAS1LQ9Y4W2 734 aaKnown RBP12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 PCDHAC2Q9Y5I4 1007 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 PTCH2Q9Y6C5 1203 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 A0A1B0GUL6 1792 aa12.07□□□□□ -0.48
SMARCD2-208ENST00000580054 DLL1O00548 723 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 PDE8AO60658 829 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 INHBEP58166 350 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 SP3Q02447 781 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 DEFB129Q9H1M3 183 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 AOX1Q06278 1338 aa12.06□□□□□ -0.48
SMARCD2-208ENST00000580054 PCCAP05165 728 aaPredicted RBP12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 CCT4P50991 539 aaKnown RBP12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 LMOD3Q0VAK6 560 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 NEUROD2Q15784 382 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 SLC9C1Q4G0N8 1177 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 RIC3Q7Z5B4 369 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 PHAXQ9H814 394 aaKnown RBP12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 HYPKQ9NX55 129 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 RBM27Q9P2N5 1060 aaKnown RBP12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 MINPP1Q9UNW1 487 aa12.05□□□□□ -0.48
SMARCD2-208ENST00000580054 HOXB7P09629 217 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 CTSWP56202 376 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 GOLGA2Q08379 1002 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 SLC4A8Q2Y0W8 1093 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 TTLL5Q6EMB2 1281 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
SMARCD2-208ENST00000580054 A0A0C4DFX4 3053 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CLRN2A0PK11 232 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 TESPA1A2RU30 521 aaPredicted RBP12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 PPP1R12BO60237 982 aaPredicted RBP12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 GTF2IP78347 998 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 NBPF12Q5TAG4 269 aaPredicted RBP12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 DUSP27Q5VZP5 1158 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CCDC146Q8IYE0 955 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CERS5Q8N5B7 392 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CCDC191Q8NCU4 936 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 SH3TC2Q8TF17 1288 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CDC5LQ99459 802 aaKnown RBP12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 GREM2Q9H772 168 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 CWC25Q9NXE8 425 aaPredicted RBP12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 TRIM35Q9UPQ4 493 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 LAMA3Q16787 3333 aa12.03□□□□□ -0.48
SMARCD2-208ENST00000580054 ZNF316A6NFI3 1004 aaPredicted RBP12.02□□□□□ -0.49
SMARCD2-208ENST00000580054 HSP90B1P14625 803 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms