RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ATP6V0A2Q9Y487 856 aa30.63■■■□□ 2.49
SHMT1-207ENST00000580002 CCDC158Q5M9N0 1113 aa30.62■■■□□ 2.49
SHMT1-207ENST00000580002 PRPF40BQ6NWY9 871 aaKnown RBP30.62■■■□□ 2.49
SHMT1-207ENST00000580002 SP8Q8IXZ3 490 aa30.62■■■□□ 2.49
SHMT1-207ENST00000580002 ZNF804BA4D1E1 1349 aa30.62■■■□□ 2.49
SHMT1-207ENST00000580002 KCNJ4P48050 445 aa30.61■■■□□ 2.49
SHMT1-207ENST00000580002 TBC1D9Q6ZT07 1266 aa30.61■■■□□ 2.49
SHMT1-207ENST00000580002 KLHL34Q8N239 644 aa30.61■■■□□ 2.49
SHMT1-207ENST00000580002 HAUS7Q99871 368 aa30.6■■■□□ 2.49
SHMT1-207ENST00000580002 TSHZ2Q9NRE2 1034 aa30.6■■■□□ 2.49
SHMT1-207ENST00000580002 POLLQ9UGP5 575 aa30.6■■■□□ 2.49
SHMT1-207ENST00000580002 IQSEC3Q9UPP2 1182 aaPredicted RBP30.6■■■□□ 2.49
SHMT1-207ENST00000580002 XDHP47989 1333 aa30.6■■■□□ 2.49
SHMT1-207ENST00000580002 SLX4Q8IY92 1834 aa30.6■■■□□ 2.49
SHMT1-207ENST00000580002 MCAMP43121 646 aa30.59■■■□□ 2.49
SHMT1-207ENST00000580002 FAM84BQ96KN1 310 aaPredicted RBP30.59■■■□□ 2.49
SHMT1-207ENST00000580002 ANTXR1Q9H6X2 564 aa30.59■■■□□ 2.49
SHMT1-207ENST00000580002 IRS2Q9Y4H2 1338 aa30.59■■■□□ 2.49
SHMT1-207ENST00000580002 CACNA1SQ13698 1873 aa30.59■■■□□ 2.49
SHMT1-207ENST00000580002 CHGBP05060 677 aa30.58■■■□□ 2.49
SHMT1-207ENST00000580002 ZAP70P43403 619 aa30.57■■■□□ 2.48
SHMT1-207ENST00000580002 CDC45O75419 566 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 UFL1O94874 794 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 FKBP4Q02790 459 aaKnown RBP eCLIP30.56■■■□□ 2.48
SHMT1-207ENST00000580002 C7orf43Q8WVR3 580 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 CNKSR1Q969H4 720 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 GOLIM4O00461 696 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 CNTROBQ8N137 903 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 TBC1D16Q8TBP0 767 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 LEMD3Q9Y2U8 911 aa30.56■■■□□ 2.48
SHMT1-207ENST00000580002 ARAP2Q8WZ64 1704 aa30.55■■■□□ 2.48
SHMT1-207ENST00000580002 ARID4AP29374 1257 aaPredicted RBP30.55■■■□□ 2.48
SHMT1-207ENST00000580002 PODXL2Q9NZ53 605 aa30.55■■■□□ 2.48
SHMT1-207ENST00000580002 GGA1Q9UJY5 639 aa30.55■■■□□ 2.48
SHMT1-207ENST00000580002 KIF13BQ9NQT8 1826 aa30.55■■■□□ 2.48
SHMT1-207ENST00000580002 RASGRF1Q13972 1273 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 TMC4Q7Z404 712 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 FBXO33Q7Z6M2 555 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 HMG20BQ9P0W2 317 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 PPIL4Q8WUA2 492 aaKnown RBP eCLIP30.54■■■□□ 2.48
SHMT1-207ENST00000580002 EVI5LQ96CN4 794 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 PAG1Q9NWQ8 432 aa30.54■■■□□ 2.48
SHMT1-207ENST00000580002 LRRC37AA6NMS7 1700 aa30.53■■■□□ 2.48
SHMT1-207ENST00000580002 ATP2B4P23634 1241 aa30.53■■■□□ 2.48
SHMT1-207ENST00000580002 CHMLP26374 656 aa30.53■■■□□ 2.48
SHMT1-207ENST00000580002 SLFNL1Q499Z3 407 aa30.53■■■□□ 2.48
SHMT1-207ENST00000580002 ZNF512BQ96KM6 892 aaPredicted RBP30.53■■■□□ 2.48
SHMT1-207ENST00000580002 SPON1Q9HCB6 807 aa30.53■■■□□ 2.48
SHMT1-207ENST00000580002 SRCAPQ6ZRS2 3230 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 C6orf229H3BNL8 230 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 C21orf2O43822 256 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 MPNDQ8N594 471 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 TTLL6Q8N841 843 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 IL25Q9H293 177 aa30.52■■■□□ 2.48
SHMT1-207ENST00000580002 TGFB2P61812 414 aa30.51■■■□□ 2.48
SHMT1-207ENST00000580002 KIAA1551Q9HCM1 1747 aa30.51■■■□□ 2.48
SHMT1-207ENST00000580002 CYP2E1P05181 493 aaPredicted RBP30.51■■■□□ 2.47
SHMT1-207ENST00000580002 AKAP11Q9UKA4 1901 aa30.51■■■□□ 2.47
SHMT1-207ENST00000580002 UQCRFS1P1P0C7P4 283 aa30.5■■■□□ 2.47
SHMT1-207ENST00000580002 CAVIN4Q5BKX8 364 aa30.5■■■□□ 2.47
SHMT1-207ENST00000580002 NLGN2Q8NFZ4 835 aa30.5■■■□□ 2.47
SHMT1-207ENST00000580002 FSD1Q9BTV5 496 aa30.5■■■□□ 2.47
SHMT1-207ENST00000580002 LTBP1Q14766 1721 aa30.5■■■□□ 2.47
SHMT1-207ENST00000580002 RIMBP2O15034 1052 aa30.49■■■□□ 2.47
SHMT1-207ENST00000580002 HIBADHP31937 336 aaKnown RBP30.49■■■□□ 2.47
SHMT1-207ENST00000580002 DPP8Q6V1X1 898 aaPredicted RBP30.49■■■□□ 2.47
SHMT1-207ENST00000580002 DUOX1Q9NRD9 1551 aa30.49■■■□□ 2.47
SHMT1-207ENST00000580002 VPS37DQ86XT2 251 aa30.49■■■□□ 2.47
SHMT1-207ENST00000580002 SPATA5Q8NB90 893 aa30.49■■■□□ 2.47
SHMT1-207ENST00000580002 PIH1D3Q9NQM4 214 aaKnown RBP30.49■■■□□ 2.47
SHMT1-207ENST00000580002 COL1A1P02452 1464 aaPredicted RBP30.48■■■□□ 2.47
SHMT1-207ENST00000580002 CD2APQ9Y5K6 639 aa30.48■■■□□ 2.47
SHMT1-207ENST00000580002 JAG2Q9Y219 1238 aa30.47■■■□□ 2.47
SHMT1-207ENST00000580002 DLEC1Q9Y238 1755 aa30.47■■■□□ 2.47
SHMT1-207ENST00000580002 MFAP1P55081 439 aaKnown RBP30.46■■■□□ 2.47
SHMT1-207ENST00000580002 KBTBD3Q8NAB2 608 aa30.46■■■□□ 2.47
SHMT1-207ENST00000580002 FAM227BQ96M60 508 aa30.46■■■□□ 2.47
SHMT1-207ENST00000580002 PIM2Q9P1W9 311 aa30.46■■■□□ 2.47
SHMT1-207ENST00000580002 C15orf52Q6ZUT6 534 aaKnown RBP30.45■■■□□ 2.46
SHMT1-207ENST00000580002 AK9Q5TCS8 1911 aa30.44■■■□□ 2.46
SHMT1-207ENST00000580002 CWC27Q6UX04 472 aaKnown RBP30.44■■■□□ 2.46
SHMT1-207ENST00000580002 SNED1Q8TER0 1413 aa30.44■■■□□ 2.46
SHMT1-207ENST00000580002 TMX4Q9H1E5 349 aaPredicted RBP30.43■■■□□ 2.46
SHMT1-207ENST00000580002 NMIQ13287 307 aaPredicted RBP30.43■■■□□ 2.46
SHMT1-207ENST00000580002 ESYT1Q9BSJ8 1104 aa30.43■■■□□ 2.46
SHMT1-207ENST00000580002 GNL3LQ9NVN8 582 aaKnown RBP30.42■■■□□ 2.46
SHMT1-207ENST00000580002 CD209Q9NNX6 404 aa30.41■■■□□ 2.46
SHMT1-207ENST00000580002 A0A0D9SFI3 127 aa30.41■■■□□ 2.46
SHMT1-207ENST00000580002 FRAT2O75474 233 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-207ENST00000580002 CHAF1AQ13111 956 aaPredicted RBP30.41■■■□□ 2.46
SHMT1-207ENST00000580002 DOK7Q18PE1 504 aa30.41■■■□□ 2.46
SHMT1-207ENST00000580002 WASHC4Q2M389 1173 aa30.41■■■□□ 2.46
SHMT1-207ENST00000580002 TDRD7Q8NHU6 1098 aaKnown RBP30.41■■■□□ 2.46
SHMT1-207ENST00000580002 SEC62Q99442 399 aaKnown RBP30.41■■■□□ 2.46
SHMT1-207ENST00000580002 DIAPH3Q9NSV4 1193 aa30.41■■■□□ 2.46
SHMT1-207ENST00000580002 MED23Q9ULK4 1368 aa30.4■■■□□ 2.46
SHMT1-207ENST00000580002 DALRD3Q5D0E6 543 aaKnown RBP30.39■■■□□ 2.46
SHMT1-207ENST00000580002 ZNF804AQ7Z570 1209 aa30.39■■■□□ 2.46
SHMT1-207ENST00000580002 FHDC1Q9C0D6 1143 aaPredicted RBP30.39■■■□□ 2.46
SHMT1-207ENST00000580002 MYO5AQ9Y4I1 1855 aaKnown RBP30.39■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms