RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 C1QTNF2Q9BXJ5 285 aa7.97□□□□□ -1.13
VPS53-219ENST00000576019 K7ELQ4 463 aaPredicted RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 OPLAHO14841 1288 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 EIF4BP23588 611 aaKnown RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 BCAMP50895 628 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 COPS2P61201 443 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 HTRA3P83110 453 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 PTPN12Q05209 780 aaKnown RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 PAK2Q13177 524 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 NFE2L2Q16236 605 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 RNF187Q5TA31 235 aaPredicted RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 SLC9A9Q8IVB4 645 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 NKX2-3Q8TAU0 364 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 KCTD15Q96SI1 283 aaPredicted RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 METTL14Q9HCE5 456 aaKnown RBP7.96□□□□□ -1.14
VPS53-219ENST00000576019 SPG7Q9UQ90 795 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 WASHC2CQ9Y4E1 1318 aa7.96□□□□□ -1.14
VPS53-219ENST00000576019 ERVH48-1M5A8F1 160 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 CLSTN1O94985 981 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 INHAP05111 366 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 ATF4P18848 351 aaPredicted RBP7.95□□□□□ -1.14
VPS53-219ENST00000576019 GJA8P48165 433 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 OSBPL3Q9H4L5 887 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 ETNK1Q9HBU6 452 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 NOP58Q9Y2X3 529 aaKnown RBP7.95□□□□□ -1.14
VPS53-219ENST00000576019 SUGT1Q9Y2Z0 365 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 ABCC5O15440 1437 aa7.95□□□□□ -1.14
VPS53-219ENST00000576019 SYCP2Q9BX26 1530 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 WASLO00401 505 aaPredicted RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 EIF1AYO14602 144 aaKnown RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 ZBTB7AO95365 584 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 PDGFAP04085 211 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 XRCC5P13010 732 aaKnown RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 PTPN5P54829 565 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 ERVK-9P63128 1117 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 VPS72Q15906 364 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 INTS6LQ5JSJ4 861 aaKnown RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 FILIP1Q7Z7B0 1213 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 CKAP2LQ8IYA6 745 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 ZCRB1Q8TBF4 217 aaKnown RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 CDV3Q9UKY7 258 aaKnown RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 COL4A3BPQ9Y5P4 624 aa7.94□□□□□ -1.14
VPS53-219ENST00000576019 SOS2Q07890 1332 aaPredicted RBP7.94□□□□□ -1.14
VPS53-219ENST00000576019 ADGRB3O60242 1522 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 DLL1O00548 723 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 USP5P45974 858 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 FOXK2Q01167 660 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 MEI1Q5TIA1 1274 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 CC2D2BQ6DHV5 1058 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 ETFBKMTQ8IXQ9 262 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 TRMT44Q8IYL2 757 aaKnown RBP7.93□□□□□ -1.14
VPS53-219ENST00000576019 ZNF526Q8TF50 670 aaPredicted RBP7.93□□□□□ -1.14
VPS53-219ENST00000576019 GPRASP2Q96D09 838 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 FRMD6Q96NE9 622 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 NEUROD4Q9HD90 331 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 SCHIP1Q9P0W5 487 aaPredicted RBP7.93□□□□□ -1.14
VPS53-219ENST00000576019 NEXMIFQ5QGS0 1516 aa7.93□□□□□ -1.14
VPS53-219ENST00000576019 TOMM70O94826 608 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 PARNO95453 639 aaKnown RBP7.92□□□□□ -1.14
VPS53-219ENST00000576019 APBA3O96018 575 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 ZAP70P43403 619 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 FAM182BQ5T319 152 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 MYO19Q96H55 970 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 ABHD8Q96I13 439 aa7.92□□□□□ -1.14
VPS53-219ENST00000576019 PDGFDQ9GZP0 370 aaPredicted RBP7.92□□□□□ -1.14
VPS53-219ENST00000576019 TSR3Q9UJK0 312 aaKnown RBP7.92□□□□□ -1.14
VPS53-219ENST00000576019 V9GY48 417 aaPredicted RBP7.92□□□□□ -1.14
VPS53-219ENST00000576019 A6NHS1 94 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 TRIM37O94972 964 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 ADH1BP00325 375 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 PSMA6P60900 246 aaKnown RBP7.91□□□□□ -1.14
VPS53-219ENST00000576019 SERINC3Q13530 473 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.91□□□□□ -1.14
VPS53-219ENST00000576019 PI16Q6UXB8 463 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 NYAP1Q6ZVC0 841 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 STAG2Q8N3U4 1231 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 MPNDQ8N594 471 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 BRINP2Q9C0B6 783 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 IFT57Q9NWB7 429 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 SLC52A1Q9NWF4 448 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 USP32Q8NFA0 1604 aa7.91□□□□□ -1.14
VPS53-219ENST00000576019 PIK3C2BO00750 1634 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 TROQ12816 1431 aaPredicted RBP7.9□□□□□ -1.14
VPS53-219ENST00000576019 DHX29Q7Z478 1369 aaKnown RBP7.9□□□□□ -1.14
VPS53-219ENST00000576019 DGKZQ13574 1117 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 SLC4A9Q96Q91 983 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 C12orf49Q9H741 205 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 PCDH12Q9NPG4 1184 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 COPRSQ9NQ92 184 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 PRDM10Q9NQV6 1147 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 TMPRSS4Q9NRS4 437 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 WBP1LQ9NX94 342 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 USP3Q9Y6I4 520 aa7.9□□□□□ -1.14
VPS53-219ENST00000576019 USP31Q70CQ4 1352 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 A6NJY4 79 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 ENPP3O14638 875 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 GRIN3BO60391 1043 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 SSBP05455 408 aaKnown RBP eCLIP7.89□□□□□ -1.15
VPS53-219ENST00000576019 C8orf34Q49A92 452 aa7.89□□□□□ -1.15
VPS53-219ENST00000576019 SH3PXD2AQ5TCZ1 1133 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms