RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 MANSC4A6NHS7 340 aaPredicted RBP11.61□□□□□ -0.55
SMG6-218ENST00000575454 LDLRAD1Q5T700 205 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 SPRYD7Q5W111 196 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 CCDC146Q8IYE0 955 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 CCDC85AQ96PX6 553 aaPredicted RBP11.61□□□□□ -0.55
SMG6-218ENST00000575454 METTL22Q9BUU2 404 aaPredicted RBP11.61□□□□□ -0.55
SMG6-218ENST00000575454 MINPP1Q9UNW1 487 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 LEMD3Q9Y2U8 911 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 MED23Q9ULK4 1368 aa11.61□□□□□ -0.55
SMG6-218ENST00000575454 CCT4P50991 539 aaKnown RBP11.6□□□□□ -0.55
SMG6-218ENST00000575454 CTSWP56202 376 aa11.6□□□□□ -0.55
SMG6-218ENST00000575454 PTPN12Q05209 780 aaKnown RBP11.6□□□□□ -0.55
SMG6-218ENST00000575454 MKRN3Q13064 507 aaKnown RBP11.6□□□□□ -0.55
SMG6-218ENST00000575454 FBXW7Q969H0 707 aa11.6□□□□□ -0.55
SMG6-218ENST00000575454 SLC10A4Q96EP9 437 aa11.6□□□□□ -0.55
SMG6-218ENST00000575454 PHAXQ9H814 394 aaKnown RBP11.6□□□□□ -0.55
SMG6-218ENST00000575454 MBIPQ9NS73 344 aa11.6□□□□□ -0.55
SMG6-218ENST00000575454 HTTP42858 3142 aa11.6□□□□□ -0.55
SMG6-218ENST00000575454 SZT2Q5T011 3432 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 PPP1R12BO60237 982 aaPredicted RBP11.59□□□□□ -0.55
SMG6-218ENST00000575454 ZBTB48P10074 688 aaPredicted RBP11.59□□□□□ -0.55
SMG6-218ENST00000575454 IGHMBP2P38935 993 aaKnown RBP11.59□□□□□ -0.55
SMG6-218ENST00000575454 GNAI1P63096 354 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 CCDC30Q5VVM6 783 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 TTLL5Q6EMB2 1281 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 OTUD7BQ6GQQ9 843 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 ANKRD2Q9GZV1 360 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 IFT57Q9NWB7 429 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 SCAF8Q9UPN6 1271 aaKnown RBP11.59□□□□□ -0.55
SMG6-218ENST00000575454 PPP2R3BQ9Y5P8 575 aa11.59□□□□□ -0.55
SMG6-218ENST00000575454 MYBBP1AQ9BQG0 1328 aaKnown RBP11.59□□□□□ -0.55
SMG6-218ENST00000575454 LRRC37AA6NMS7 1700 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 ZNF853P0CG23 659 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 NEXNQ0ZGT2 675 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 PRKG1Q13976 671 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 SUPT20HL1Q3ZLR7 823 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 HABP4Q5JVS0 413 aaKnown RBP11.58□□□□□ -0.56
SMG6-218ENST00000575454 IFNL1Q8IU54 200 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 TTLL11Q8NHH1 800 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 ERO1AQ96HE7 468 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 DEFB129Q9H1M3 183 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 ANGEL1Q9UNK9 670 aaKnown RBP11.58□□□□□ -0.56
SMG6-218ENST00000575454 TRIM17Q9Y577 477 aa11.58□□□□□ -0.56
SMG6-218ENST00000575454 ANKRD36CQ5JPF3 1778 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 PAPPA2Q9BXP8 1791 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 SASH1O94885 1247 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 ARHGEF6Q15052 776 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 DLGAP5Q15398 846 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 MAP3K11Q16584 847 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 KSR2Q6VAB6 950 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 OTOP1Q7RTM1 612 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 JARID2Q92833 1246 aaPredicted RBP11.57□□□□□ -0.56
SMG6-218ENST00000575454 MXD3Q9BW11 206 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 GREM2Q9H772 168 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 ADAMTS8Q9UP79 889 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 ZNF804BA4D1E1 1349 aa11.57□□□□□ -0.56
SMG6-218ENST00000575454 ELL2O00472 640 aaPredicted RBP11.56□□□□□ -0.56
SMG6-218ENST00000575454 MYO1BO43795 1136 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 KCNJ4P48050 445 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 KIAA0825Q8IV33 1275 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 MTMR14Q8NCE2 650 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 ZBED3Q96IU2 234 aaPredicted RBP11.56□□□□□ -0.56
SMG6-218ENST00000575454 MPHOSPH8Q99549 860 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 R3HDMLQ9H3Y0 253 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 MAP3K2Q9Y2U5 619 aa11.56□□□□□ -0.56
SMG6-218ENST00000575454 CEP290O15078 2479 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 PI4KAP2A4QPH2 592 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 GTF2IP78347 998 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 PI4KAP1Q8N8J0 262 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 PTPN22Q9Y2R2 807 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 COL1A1P02452 1464 aaPredicted RBP11.55□□□□□ -0.56
SMG6-218ENST00000575454 CENPFP49454 3210 aa11.55□□□□□ -0.56
SMG6-218ENST00000575454 WTIPA6NIX2 430 aaPredicted RBP11.54□□□□□ -0.56
SMG6-218ENST00000575454 IGKV5-2P06315 115 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 IREB2P48200 963 aaKnown RBP11.54□□□□□ -0.56
SMG6-218ENST00000575454 ARMC5Q96C12 935 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 WNK4Q96J92 1243 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 TMEM106CQ9BVX2 250 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 STK31Q9BXU1 1019 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 EFCC1Q9HA90 598 aa11.54□□□□□ -0.56
SMG6-218ENST00000575454 H7C1W4 665 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 IGF2BP3O00425 579 aaKnown RBP eCLIP11.53□□□□□ -0.56
SMG6-218ENST00000575454 ITGA6P23229 1130 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 SP3Q02447 781 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 NBPF11Q86T75 865 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 TXNRD3Q86VQ6 643 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 C8orf58Q8NAV2 365 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 PLA2G12BQ9BX93 195 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 CD209Q9NNX6 404 aa11.53□□□□□ -0.56
SMG6-218ENST00000575454 RANBP2P49792 3224 aaKnown RBP11.52□□□□□ -0.56
SMG6-218ENST00000575454 TESPA1A2RU30 521 aaPredicted RBP11.52□□□□□ -0.57
SMG6-218ENST00000575454 POTEFA5A3E0 1075 aa11.52□□□□□ -0.57
SMG6-218ENST00000575454 NEURL1BA8MQ27 555 aa11.52□□□□□ -0.57
SMG6-218ENST00000575454 WDHD1O75717 1129 aaPredicted RBP11.52□□□□□ -0.57
SMG6-218ENST00000575454 FKBP1AP62942 108 aaKnown RBP11.52□□□□□ -0.57
SMG6-218ENST00000575454 C15orf52Q6ZUT6 534 aaKnown RBP11.52□□□□□ -0.57
SMG6-218ENST00000575454 ANKRD13AQ8IZ07 590 aa11.52□□□□□ -0.57
SMG6-218ENST00000575454 BRCA2P51587 3418 aa11.52□□□□□ -0.57
SMG6-218ENST00000575454 SPDYE2BA6NHP3 402 aa11.51□□□□□ -0.57
SMG6-218ENST00000575454 APAF1O14727 1248 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms