RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 GNRH1P01148 92 aa21.7■■□□□ 1.06
VPS53-218ENST00000575207 GJA5P36382 358 aa21.7■■□□□ 1.06
VPS53-218ENST00000575207 PRMT2P55345 433 aa21.7■■□□□ 1.06
VPS53-218ENST00000575207 DCAF8Q5TAQ9 597 aa21.7■■□□□ 1.06
VPS53-218ENST00000575207 PODXL2Q9NZ53 605 aa21.7■■□□□ 1.06
VPS53-218ENST00000575207 HOXD11P31277 338 aaPredicted RBP21.69■■□□□ 1.06
VPS53-218ENST00000575207 PHACTR3Q96KR7 559 aa21.69■■□□□ 1.06
VPS53-218ENST00000575207 FARP2O94887 1054 aaPredicted RBP21.68■■□□□ 1.06
VPS53-218ENST00000575207 BCAMP50895 628 aa21.68■■□□□ 1.06
VPS53-218ENST00000575207 MCM10Q7L590 875 aa21.68■■□□□ 1.06
VPS53-218ENST00000575207 APOBEC3FQ8IUX4 373 aaKnown RBP21.68■■□□□ 1.06
VPS53-218ENST00000575207 ZFYVE28Q9HCC9 887 aa21.68■■□□□ 1.06
VPS53-218ENST00000575207 RAPGEFL1Q9UHV5 662 aa21.68■■□□□ 1.06
VPS53-218ENST00000575207 LAMA2P24043 3122 aaKnown RBP21.68■■□□□ 1.06
VPS53-218ENST00000575207 SH3TC1Q8TE82 1336 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 USP17L3A6NCW0 530 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 USP17L4A6NCW7 530 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 USP17L1Q7RTZ2 530 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 NLRP10Q86W26 655 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 FAM122AQ96E09 287 aa21.67■■□□□ 1.06
VPS53-218ENST00000575207 ARHGAP39Q9C0H5 1083 aa21.66■■□□□ 1.06
VPS53-218ENST00000575207 PPP1R12BO60237 982 aaPredicted RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 SF3B3Q15393 1217 aaKnown RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 TAF1CQ15572 869 aaPredicted RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 OGFOD1Q8N543 542 aa21.65■■□□□ 1.06
VPS53-218ENST00000575207 RTF1Q92541 710 aaKnown RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 TRMT112Q9UI30 125 aaKnown RBP21.65■■□□□ 1.06
VPS53-218ENST00000575207 COL1A1P02452 1464 aaPredicted RBP21.64■■□□□ 1.06
VPS53-218ENST00000575207 LACTBP83111 547 aaPredicted RBP21.64■■□□□ 1.05
VPS53-218ENST00000575207 TAF7Q15545 349 aaPredicted RBP21.64■■□□□ 1.05
VPS53-218ENST00000575207 PODNQ7Z5L7 613 aa21.64■■□□□ 1.05
VPS53-218ENST00000575207 MS4A4AQ96JQ5 239 aa21.64■■□□□ 1.05
VPS53-218ENST00000575207 GUCD1Q96NT3 240 aa21.64■■□□□ 1.05
VPS53-218ENST00000575207 KNSTRNQ9Y448 316 aa21.64■■□□□ 1.05
VPS53-218ENST00000575207 U2SURPO15042 1029 aaKnown RBP21.63■■□□□ 1.05
VPS53-218ENST00000575207 UFL1O94874 794 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 CCL5P13501 91 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 MMP14P50281 582 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 KIF22Q14807 665 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 AMER1Q5JTC6 1135 aaPredicted RBP21.63■■□□□ 1.05
VPS53-218ENST00000575207 LRP10Q7Z4F1 713 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 TDHQ8IZJ6 230 aa21.63■■□□□ 1.05
VPS53-218ENST00000575207 SSC5DA1L4H1 1573 aa21.62■■□□□ 1.05
VPS53-218ENST00000575207 SASH1O94885 1247 aa21.62■■□□□ 1.05
VPS53-218ENST00000575207 FAM109BQ6ICB4 259 aaPredicted RBP21.62■■□□□ 1.05
VPS53-218ENST00000575207 U2AF1L4Q8WU68 220 aaKnown RBP21.62■■□□□ 1.05
VPS53-218ENST00000575207 SYMPKQ92797 1274 aaKnown RBP21.62■■□□□ 1.05
VPS53-218ENST00000575207 RNF208Q9H0X6 261 aa21.62■■□□□ 1.05
VPS53-218ENST00000575207 COL4A1P02462 1669 aa21.62■■□□□ 1.05
VPS53-218ENST00000575207 COL3A1P02461 1466 aaPredicted RBP21.61■■□□□ 1.05
VPS53-218ENST00000575207 HSP90AB3PQ58FF7 597 aa21.61■■□□□ 1.05
VPS53-218ENST00000575207 DEFB129Q9H1M3 183 aa21.61■■□□□ 1.05
VPS53-218ENST00000575207 MIS18AQ9NYP9 233 aa21.61■■□□□ 1.05
VPS53-218ENST00000575207 POTEB2H3BUK9 544 aa21.6■■□□□ 1.05
VPS53-218ENST00000575207 GRK4P32298 578 aa21.6■■□□□ 1.05
VPS53-218ENST00000575207 RPS8P62241 208 aaKnown RBP21.6■■□□□ 1.05
VPS53-218ENST00000575207 BRI3BPQ8WY22 251 aa21.6■■□□□ 1.05
VPS53-218ENST00000575207 ZBED3Q96IU2 234 aaPredicted RBP21.6■■□□□ 1.05
VPS53-218ENST00000575207 GGA1Q9UJY5 639 aa21.6■■□□□ 1.05
VPS53-218ENST00000575207 ZSWIM8A7E2V4 1837 aa21.59■■□□□ 1.05
VPS53-218ENST00000575207 TLR2O60603 784 aa21.59■■□□□ 1.05
VPS53-218ENST00000575207 CAPN2P17655 700 aa21.59■■□□□ 1.05
VPS53-218ENST00000575207 DCTN1Q14203 1278 aa21.59■■□□□ 1.05
VPS53-218ENST00000575207 DACT2Q5SW24 774 aa21.59■■□□□ 1.05
VPS53-218ENST00000575207 HTATSF1O43719 755 aaKnown RBP21.58■■□□□ 1.05
VPS53-218ENST00000575207 SGPL1O95470 568 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 PRKAR2BP31323 418 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 ANKRD13AQ8IZ07 590 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 ANKIB1Q9P2G1 1089 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 SRRDQ9UH36 339 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 RIPOR2Q9Y4F9 1068 aa21.58■■□□□ 1.05
VPS53-218ENST00000575207 MYO3BQ8WXR4 1341 aa21.57■■□□□ 1.04
VPS53-218ENST00000575207 IREB2P48200 963 aaKnown RBP21.57■■□□□ 1.04
VPS53-218ENST00000575207 EIF4A1P60842 406 aaKnown RBP21.57■■□□□ 1.04
VPS53-218ENST00000575207 PPP2R3BQ9Y5P8 575 aa21.57■■□□□ 1.04
VPS53-218ENST00000575207 USP2O75604 605 aaPredicted RBP21.56■■□□□ 1.04
VPS53-218ENST00000575207 FAM43AQ8N2R8 423 aa21.56■■□□□ 1.04
VPS53-218ENST00000575207 MXD3Q9BW11 206 aa21.56■■□□□ 1.04
VPS53-218ENST00000575207 RSPH6AQ9H0K4 717 aa21.56■■□□□ 1.04
VPS53-218ENST00000575207 SUPT20HL1Q3ZLR7 823 aa21.55■■□□□ 1.04
VPS53-218ENST00000575207 OPTNQ96CV9 577 aa21.55■■□□□ 1.04
VPS53-218ENST00000575207 TRIM47Q96LD4 638 aa21.55■■□□□ 1.04
VPS53-218ENST00000575207 THUMPD2Q9BTF0 503 aaKnown RBP21.55■■□□□ 1.04
VPS53-218ENST00000575207 IRS2Q9Y4H2 1338 aa21.55■■□□□ 1.04
VPS53-218ENST00000575207 CCL15-CCL14A0A0B4J2E2 113 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 UBXN2AP68543 259 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 PDIA6Q15084 440 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 CCL15Q16663 113 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 RAET1EQ8TD07 263 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 ALPK3Q96L96 1907 aa21.54■■□□□ 1.04
VPS53-218ENST00000575207 WDHD1O75717 1129 aaPredicted RBP21.53■■□□□ 1.04
VPS53-218ENST00000575207 MAGEA10P43363 369 aaPredicted RBP21.53■■□□□ 1.04
VPS53-218ENST00000575207 PNISRQ8TF01 805 aaKnown RBP21.53■■□□□ 1.04
VPS53-218ENST00000575207 TNFRSF10AO00220 468 aa21.52■■□□□ 1.04
VPS53-218ENST00000575207 HOXD10P28358 340 aa21.52■■□□□ 1.04
VPS53-218ENST00000575207 CTGFP29279 349 aa21.52■■□□□ 1.04
VPS53-218ENST00000575207 GTF2A2P52657 109 aa21.52■■□□□ 1.04
VPS53-218ENST00000575207 STRIP1Q5VSL9 837 aa21.52■■□□□ 1.04
VPS53-218ENST00000575207 HELBQ8NG08 1087 aaPredicted RBP21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms