RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 AGBL3Q8NEM8 1001 aa25.27■■□□□ 1.64
NUP88-204ENST00000572290 KLRG1Q96E93 195 aa25.27■■□□□ 1.64
NUP88-204ENST00000572290 PUS3Q9BZE2 481 aaKnown RBP25.27■■□□□ 1.64
NUP88-204ENST00000572290 CREBZFQ9NS37 354 aa25.27■■□□□ 1.64
NUP88-204ENST00000572290 INTS3Q68E01 1043 aaKnown RBP25.26■■□□□ 1.63
NUP88-204ENST00000572290 C15orf52Q6ZUT6 534 aaKnown RBP25.26■■□□□ 1.63
NUP88-204ENST00000572290 SAMD7Q7Z3H4 446 aa25.26■■□□□ 1.63
NUP88-204ENST00000572290 ZC3H15Q8WU90 426 aaKnown RBP25.26■■□□□ 1.63
NUP88-204ENST00000572290 PGAP2Q9UHJ9 254 aa25.26■■□□□ 1.63
NUP88-204ENST00000572290 TBC1D10BQ4KMP7 808 aaPredicted RBP25.25■■□□□ 1.63
NUP88-204ENST00000572290 ATF7IPQ6VMQ6 1270 aa25.25■■□□□ 1.63
NUP88-204ENST00000572290 HDAC5Q9UQL6 1122 aa25.25■■□□□ 1.63
NUP88-204ENST00000572290 RIPOR2Q9Y4F9 1068 aa25.25■■□□□ 1.63
NUP88-204ENST00000572290 SPEF2Q9C093 1822 aa25.25■■□□□ 1.63
NUP88-204ENST00000572290 ZNF609O15014 1411 aa25.24■■□□□ 1.63
NUP88-204ENST00000572290 IRS2Q9Y4H2 1338 aa25.24■■□□□ 1.63
NUP88-204ENST00000572290 TMEM88BA6NKF7 163 aa25.24■■□□□ 1.63
NUP88-204ENST00000572290 TRIM27P14373 513 aa25.24■■□□□ 1.63
NUP88-204ENST00000572290 RBM26Q5T8P6 1007 aaKnown RBP25.24■■□□□ 1.63
NUP88-204ENST00000572290 FBXW7Q969H0 707 aa25.24■■□□□ 1.63
NUP88-204ENST00000572290 MROH5Q6ZUA9 1318 aa25.23■■□□□ 1.63
NUP88-204ENST00000572290 DACT2Q5SW24 774 aa25.23■■□□□ 1.63
NUP88-204ENST00000572290 STRIP1Q5VSL9 837 aa25.23■■□□□ 1.63
NUP88-204ENST00000572290 GMLQ99445 158 aa25.23■■□□□ 1.63
NUP88-204ENST00000572290 CD209Q9NNX6 404 aa25.23■■□□□ 1.63
NUP88-204ENST00000572290 EGFRP00533 1210 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 UBE4AQ14139 1066 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 LRRC24Q50LG9 513 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 ZNF804AQ7Z570 1209 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 KLHDC4Q8TBB5 520 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 MEIS3Q99687 375 aa25.22■■□□□ 1.63
NUP88-204ENST00000572290 USP17L8P0C7I0 530 aa25.21■■□□□ 1.63
NUP88-204ENST00000572290 ZNF280AP59817 542 aaPredicted RBP25.21■■□□□ 1.63
NUP88-204ENST00000572290 KIF4BQ2VIQ3 1234 aa25.21■■□□□ 1.63
NUP88-204ENST00000572290 ZKSCAN2Q63HK3 967 aa25.21■■□□□ 1.63
NUP88-204ENST00000572290 TTLL5Q6EMB2 1281 aa25.21■■□□□ 1.63
NUP88-204ENST00000572290 TNNQ9UQP3 1299 aa25.21■■□□□ 1.63
NUP88-204ENST00000572290 MYO3BQ8WXR4 1341 aa25.2■■□□□ 1.62
NUP88-204ENST00000572290 RFX5P48382 616 aaPredicted RBP25.2■■□□□ 1.62
NUP88-204ENST00000572290 METTL24Q5JXM2 366 aa25.2■■□□□ 1.62
NUP88-204ENST00000572290 CLUAP1Q96AJ1 413 aa25.2■■□□□ 1.62
NUP88-204ENST00000572290 MXD3Q9BW11 206 aa25.2■■□□□ 1.62
NUP88-204ENST00000572290 LRRFIP2Q9Y608 721 aaKnown RBP25.2■■□□□ 1.62
NUP88-204ENST00000572290 TRAF5O00463 557 aa25.19■■□□□ 1.62
NUP88-204ENST00000572290 GNAI3P08754 354 aa25.19■■□□□ 1.62
NUP88-204ENST00000572290 GTF2IP78347 998 aa25.19■■□□□ 1.62
NUP88-204ENST00000572290 FMR1Q06787 632 aaKnown RBP eCLIP25.19■■□□□ 1.62
NUP88-204ENST00000572290 CDC37L1Q7L3B6 337 aa25.19■■□□□ 1.62
NUP88-204ENST00000572290 GLIS2Q9BZE0 524 aaPredicted RBP25.19■■□□□ 1.62
NUP88-204ENST00000572290 SCN9AQ15858 1988 aa25.18■■□□□ 1.62
NUP88-204ENST00000572290 IL1R1P14778 569 aa25.17■■□□□ 1.62
NUP88-204ENST00000572290 PTPN12Q05209 780 aaKnown RBP25.17■■□□□ 1.62
NUP88-204ENST00000572290 MYOZ2Q9NPC6 264 aa25.17■■□□□ 1.62
NUP88-204ENST00000572290 MKRN1Q9UHC7 482 aaKnown RBP25.17■■□□□ 1.62
NUP88-204ENST00000572290 EYA2O00167 538 aa25.16■■□□□ 1.62
NUP88-204ENST00000572290 PDE8BO95263 885 aa25.16■■□□□ 1.62
NUP88-204ENST00000572290 OGFOD1Q8N543 542 aa25.16■■□□□ 1.62
NUP88-204ENST00000572290 JMYQ8N9B5 988 aa25.16■■□□□ 1.62
NUP88-204ENST00000572290 USP48Q86UV5 1035 aa25.15■■□□□ 1.62
NUP88-204ENST00000572290 VGLL2Q8N8G2 317 aa25.15■■□□□ 1.62
NUP88-204ENST00000572290 DCPSQ96C86 337 aaKnown RBP25.15■■□□□ 1.62
NUP88-204ENST00000572290 HIBADHP31937 336 aaKnown RBP25.14■■□□□ 1.62
NUP88-204ENST00000572290 GYG1P46976 350 aa25.14■■□□□ 1.62
NUP88-204ENST00000572290 MMP14P50281 582 aa25.14■■□□□ 1.62
NUP88-204ENST00000572290 TMEM57Q8N5G2 664 aa25.14■■□□□ 1.62
NUP88-204ENST00000572290 FAM84BQ96KN1 310 aaPredicted RBP25.14■■□□□ 1.62
NUP88-204ENST00000572290 SCARF1Q14162 830 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 CST9Q5W186 159 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 KRT26Q7Z3Y9 468 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 GGA3Q9NZ52 723 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 FBXO3Q9UK99 471 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 ABT1Q9ULW3 272 aaKnown RBP25.13■■□□□ 1.61
NUP88-204ENST00000572290 CNTNAP1P78357 1384 aa25.13■■□□□ 1.61
NUP88-204ENST00000572290 CELF2O95319 508 aaKnown RBP25.12■■□□□ 1.61
NUP88-204ENST00000572290 KIAA0825Q8IV33 1275 aa25.12■■□□□ 1.61
NUP88-204ENST00000572290 FTSJ3Q8IY81 847 aaKnown RBP25.12■■□□□ 1.61
NUP88-204ENST00000572290 SIL1Q9H173 461 aa25.12■■□□□ 1.61
NUP88-204ENST00000572290 HDAC9Q9UKV0 1011 aa25.12■■□□□ 1.61
NUP88-204ENST00000572290 ASTN2O75129 1339 aaPredicted RBP25.12■■□□□ 1.61
NUP88-204ENST00000572290 CIAO1O76071 339 aa25.11■■□□□ 1.61
NUP88-204ENST00000572290 SASH1O94885 1247 aa25.11■■□□□ 1.61
NUP88-204ENST00000572290 PUM3Q15397 648 aaKnown RBP25.11■■□□□ 1.61
NUP88-204ENST00000572290 ATG9AQ7Z3C6 839 aa25.11■■□□□ 1.61
NUP88-204ENST00000572290 TDRD7Q8NHU6 1098 aaKnown RBP25.11■■□□□ 1.61
NUP88-204ENST00000572290 RASSF10A6NK89 507 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 GNAI2P04899 355 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 FKBP1AP62942 108 aaKnown RBP25.1■■□□□ 1.61
NUP88-204ENST00000572290 DEFB115Q30KQ5 88 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 CAVIN4Q5BKX8 364 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 ANGEL2Q5VTE6 544 aaKnown RBP25.1■■□□□ 1.61
NUP88-204ENST00000572290 VPS37DQ86XT2 251 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 SULF1Q8IWU6 871 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 DZIP1LQ8IYY4 767 aaKnown RBP25.1■■□□□ 1.61
NUP88-204ENST00000572290 CERS5Q8N5B7 392 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 ZNF408Q9H9D4 720 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 JAG2Q9Y219 1238 aa25.1■■□□□ 1.61
NUP88-204ENST00000572290 A0A1B0GUL6 1792 aa25.09■■□□□ 1.61
NUP88-204ENST00000572290 ADM5C9JUS6 153 aa25.09■■□□□ 1.61
NUP88-204ENST00000572290 IFIT1P09914 478 aaKnown RBP25.09■■□□□ 1.61
NUP88-204ENST00000572290 FGFR2P21802 821 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms