RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 GPR152Q8TDT2 470 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 PIK3R5Q8WYR1 880 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 EDEM1Q92611 657 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 GMCL1Q96IK5 515 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 ZCCHC2Q9C0B9 1178 aaKnown RBP8.5□□□□□ -1.05
VPS53-212ENST00000572259 KIAA1522Q9P206 1035 aaPredicted RBP8.5□□□□□ -1.05
VPS53-212ENST00000572259 CAMSAP1Q5T5Y3 1602 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 A2ML1A8K2U0 1454 aa8.5□□□□□ -1.05
VPS53-212ENST00000572259 POTECB2RU33 542 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 ATXN7O15265 892 aaPredicted RBP8.49□□□□□ -1.05
VPS53-212ENST00000572259 EPB42P16452 691 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 MZF1P28698 734 aaPredicted RBP8.49□□□□□ -1.05
VPS53-212ENST00000572259 DBN1Q16643 649 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 FOXR1Q6PIV2 292 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 ANKLE2Q86XL3 938 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 ZSCAN29Q8IWY8 852 aaPredicted RBP8.49□□□□□ -1.05
VPS53-212ENST00000572259 CCDC87Q9NVE4 849 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 DMGDHQ9UI17 866 aaKnown RBP8.49□□□□□ -1.05
VPS53-212ENST00000572259 POLIQ9UNA4 740 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 PCDHGC4Q9Y5F7 938 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 MROH1Q8NDA8 1641 aa8.49□□□□□ -1.05
VPS53-212ENST00000572259 NUP155O75694 1391 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 CEP170BQ9Y4F5 1589 aaPredicted RBP8.48□□□□□ -1.05
VPS53-212ENST00000572259 MYO3AQ8NEV4 1616 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 OPLAHO14841 1288 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 SMARCA5O60264 1052 aaPredicted RBP8.48□□□□□ -1.05
VPS53-212ENST00000572259 FZD6O60353 706 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 USP5P45974 858 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 SAMD5Q5TGI4 173 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 RGL4Q8IZJ4 473 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 CMTR1Q8N1G2 835 aaKnown RBP8.48□□□□□ -1.05
VPS53-212ENST00000572259 ZNF775Q96BV0 537 aaPredicted RBP8.48□□□□□ -1.05
VPS53-212ENST00000572259 CITED4Q96RK1 184 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 BRD7Q9NPI1 651 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 SLC52A1Q9NWF4 448 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 ZNF142P52746 1687 aaPredicted RBP8.48□□□□□ -1.05
VPS53-212ENST00000572259 LMTK2Q8IWU2 1503 aa8.48□□□□□ -1.05
VPS53-212ENST00000572259 ERVK-7P63135 1459 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 CDC14CA4D256 554 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 KHNYNO15037 678 aaKnown RBP8.47□□□□□ -1.05
VPS53-212ENST00000572259 PPFIA3O75145 1194 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 RPLP1P05386 114 aaKnown RBP8.47□□□□□ -1.05
VPS53-212ENST00000572259 TCF3P15923 654 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 INPP5BP32019 993 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 CUEDC1Q9NWM3 386 aaPredicted RBP8.47□□□□□ -1.05
VPS53-212ENST00000572259 EID1Q9Y6B2 187 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 SPATA31D1Q6ZQQ2 1576 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 UGGT1Q9NYU2 1555 aa8.47□□□□□ -1.05
VPS53-212ENST00000572259 PTPRTO14522 1441 aa8.46□□□□□ -1.05
VPS53-212ENST00000572259 PLA2R1Q13018 1463 aa8.46□□□□□ -1.05
VPS53-212ENST00000572259 RPRD2Q5VT52 1461 aaKnown RBP8.46□□□□□ -1.05
VPS53-212ENST00000572259 STRCQ7RTU9 1775 aa8.46□□□□□ -1.05
VPS53-212ENST00000572259 PDGFAP04085 211 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 TYRO3Q06418 890 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 PDE3BQ13370 1112 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 C8orf34Q49A92 452 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 NUDT16Q96DE0 195 aaKnown RBP8.46□□□□□ -1.06
VPS53-212ENST00000572259 TRERF1Q96PN7 1200 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 FNDC3AQ9Y2H6 1198 aaKnown RBP8.46□□□□□ -1.06
VPS53-212ENST00000572259 RTCBQ9Y3I0 505 aaKnown RBP8.46□□□□□ -1.06
VPS53-212ENST00000572259 VWDEQ8N2E2 1590 aa8.46□□□□□ -1.06
VPS53-212ENST00000572259 DCDC2BA2VCK2 349 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 ZNF787Q6DD87 383 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 SV2AQ7L0J3 742 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 GTPBP3Q969Y2 492 aaKnown RBP8.45□□□□□ -1.06
VPS53-212ENST00000572259 ZNF837Q96EG3 531 aaPredicted RBP8.45□□□□□ -1.06
VPS53-212ENST00000572259 RBCK1Q9BYM8 510 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 PHF24Q9UPV7 400 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 KCNH4Q9UQ05 1017 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 USP20Q9Y2K6 914 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 TET3O43151 1660 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 GCC2Q8IWJ2 1684 aa8.45□□□□□ -1.06
VPS53-212ENST00000572259 UNC13BO14795 1591 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 ANKRD33BA6NCL7 494 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 THBS1P07996 1170 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 FAM157BP0CG42 384 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 EHHADHQ08426 723 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 IDI1Q13907 227 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 VWA5B2Q8N398 1253 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 ASB16Q96NS5 453 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 HFM1A2PYH4 1435 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 NAIPQ13075 1403 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 EFCAB6Q5THR3 1501 aa8.44□□□□□ -1.06
VPS53-212ENST00000572259 BNIP3LO60238 219 aa8.43□□□□□ -1.06
VPS53-212ENST00000572259 MAPTP10636 758 aaKnown RBP8.43□□□□□ -1.06
VPS53-212ENST00000572259 TNP2Q05952 138 aa8.43□□□□□ -1.06
VPS53-212ENST00000572259 UBXN4Q92575 508 aa8.43□□□□□ -1.06
VPS53-212ENST00000572259 DMRTB1Q96MA1 342 aa8.43□□□□□ -1.06
VPS53-212ENST00000572259 NXF1Q9UBU9 619 aaKnown RBP8.43□□□□□ -1.06
VPS53-212ENST00000572259 IQGAP3Q86VI3 1631 aa8.43□□□□□ -1.06
VPS53-212ENST00000572259 UBAP1LF5GYI3 381 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 SFSWAPQ12872 951 aaKnown RBP8.42□□□□□ -1.06
VPS53-212ENST00000572259 LAMC2Q13753 1193 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 DNAJC14Q6Y2X3 702 aaPredicted RBP8.42□□□□□ -1.06
VPS53-212ENST00000572259 TMC7Q7Z402 723 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 ABHD17AQ96GS6 310 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 MARK1Q9P0L2 795 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 ATXN7L1Q9ULK2 861 aaPredicted RBP8.42□□□□□ -1.06
VPS53-212ENST00000572259 NOS1P29475 1434 aa8.42□□□□□ -1.06
VPS53-212ENST00000572259 POLR1AO95602 1720 aaPredicted RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms