RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 SASH1O94885 1247 aa14.42□□□□□ -0.1
VPS53-207ENST00000570510 ZBTB48P10074 688 aaPredicted RBP14.42□□□□□ -0.1
VPS53-207ENST00000570510 SP3Q02447 781 aa14.42□□□□□ -0.1
VPS53-207ENST00000570510 ANKRD18AQ8IVF6 992 aa14.42□□□□□ -0.1
VPS53-207ENST00000570510 CHPF2Q9P2E5 772 aa14.42□□□□□ -0.1
VPS53-207ENST00000570510 H0YGN5 161 aa14.41□□□□□ -0.1
VPS53-207ENST00000570510 MYCP01106 439 aaPredicted RBP14.41□□□□□ -0.1
VPS53-207ENST00000570510 MMP14P50281 582 aa14.41□□□□□ -0.1
VPS53-207ENST00000570510 RIPK4P57078 832 aa14.41□□□□□ -0.1
VPS53-207ENST00000570510 LDLRAD1Q5T700 205 aa14.41□□□□□ -0.1
VPS53-207ENST00000570510 CCDC85AQ96PX6 553 aaPredicted RBP14.41□□□□□ -0.1
VPS53-207ENST00000570510 ISCA1Q9BUE6 129 aa14.41□□□□□ -0.1
VPS53-207ENST00000570510 LAS1LQ9Y4W2 734 aaKnown RBP14.41□□□□□ -0.1
VPS53-207ENST00000570510 SCN9AQ15858 1988 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 LMOD3Q0VAK6 560 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 CRHR2Q13324 411 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 HDGFL1Q5TGJ6 251 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 CHRDL2Q6WN34 429 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 RIC3Q7Z5B4 369 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 ZBTB38Q8NAP3 1195 aaPredicted RBP14.4□□□□□ -0.1
VPS53-207ENST00000570510 DPF3Q92784 378 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 PLEKHF1Q96S99 279 aa14.4□□□□□ -0.1
VPS53-207ENST00000570510 IGF2BP3O00425 579 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS53-207ENST00000570510 STRIP1Q5VSL9 837 aa14.39□□□□□ -0.11
VPS53-207ENST00000570510 WNK4Q96J92 1243 aa14.39□□□□□ -0.11
VPS53-207ENST00000570510 MXD3Q9BW11 206 aa14.39□□□□□ -0.11
VPS53-207ENST00000570510 DBF4Q9UBU7 674 aaPredicted RBP14.39□□□□□ -0.11
VPS53-207ENST00000570510 FZD1Q9UP38 647 aa14.39□□□□□ -0.11
VPS53-207ENST00000570510 KIAA0100Q14667 2235 aaKnown RBP14.39□□□□□ -0.11
VPS53-207ENST00000570510 WDHD1O75717 1129 aaPredicted RBP14.38□□□□□ -0.11
VPS53-207ENST00000570510 IREB2P48200 963 aaKnown RBP14.38□□□□□ -0.11
VPS53-207ENST00000570510 SUPT20HL1Q3ZLR7 823 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 DACT2Q5SW24 774 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 KIAA0825Q8IV33 1275 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 ZNF333Q96JL9 665 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 CDC5LQ99459 802 aaKnown RBP14.38□□□□□ -0.11
VPS53-207ENST00000570510 DEFB129Q9H1M3 183 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 HYPKQ9NX55 129 aa14.38□□□□□ -0.11
VPS53-207ENST00000570510 DLG5Q8TDM6 1919 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 CENPFP49454 3210 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 MYO1BO43795 1136 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 PDE8AO60658 829 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 GOLGA2Q08379 1002 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 TRIM28Q13263 835 aaKnown RBP14.37□□□□□ -0.11
VPS53-207ENST00000570510 DLGAP5Q15398 846 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 TTLL5Q6EMB2 1281 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 CLMNQ96JQ2 1002 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 COA1Q9GZY4 146 aa14.37□□□□□ -0.11
VPS53-207ENST00000570510 OTUD5Q96G74 571 aa14.36□□□□□ -0.11
VPS53-207ENST00000570510 PTCH2Q9Y6C5 1203 aa14.36□□□□□ -0.11
VPS53-207ENST00000570510 UNCXA6NJT0 531 aa14.35□□□□□ -0.11
VPS53-207ENST00000570510 KIF22Q14807 665 aa14.35□□□□□ -0.11
VPS53-207ENST00000570510 KRT24Q2M2I5 525 aa14.35□□□□□ -0.11
VPS53-207ENST00000570510 ZFYVE28Q9HCC9 887 aa14.35□□□□□ -0.11
VPS53-207ENST00000570510 HTTP42858 3142 aa14.35□□□□□ -0.11
VPS53-207ENST00000570510 MED23Q9ULK4 1368 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 CCT4P50991 539 aaKnown RBP14.34□□□□□ -0.11
VPS53-207ENST00000570510 NEUROD2Q15784 382 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 MAP3K11Q16584 847 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 ANKRD13AQ8IZ07 590 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 MYD88Q99836 296 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 RBM27Q9P2N5 1060 aaKnown RBP14.34□□□□□ -0.11
VPS53-207ENST00000570510 PPP2R3BQ9Y5P8 575 aa14.34□□□□□ -0.11
VPS53-207ENST00000570510 TRIOBPQ9H2D6 2365 aa14.33□□□□□ -0.11
VPS53-207ENST00000570510 RBBP6Q7Z6E9 1792 aaKnown RBP14.33□□□□□ -0.12
VPS53-207ENST00000570510 PCCAP05165 728 aaPredicted RBP14.33□□□□□ -0.12
VPS53-207ENST00000570510 GTF2IP78347 998 aa14.33□□□□□ -0.12
VPS53-207ENST00000570510 TAF1CQ15572 869 aaPredicted RBP14.33□□□□□ -0.12
VPS53-207ENST00000570510 CCDC191Q8NCU4 936 aa14.33□□□□□ -0.12
VPS53-207ENST00000570510 JARID2Q92833 1246 aaPredicted RBP14.33□□□□□ -0.12
VPS53-207ENST00000570510 VEZTQ9HBM0 779 aa14.33□□□□□ -0.12
VPS53-207ENST00000570510 CWC25Q9NXE8 425 aaPredicted RBP14.33□□□□□ -0.12
VPS53-207ENST00000570510 COL4A1P02462 1669 aa14.33□□□□□ -0.12
VPS53-207ENST00000570510 BRCA2P51587 3418 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 COL1A1P02452 1464 aaPredicted RBP14.32□□□□□ -0.12
VPS53-207ENST00000570510 HOXB7P09629 217 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 KCNJ4P48050 445 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 SH3TC2Q8TF17 1288 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 HTATIP2Q9BUP3 242 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 BSDC1Q9NW68 430 aaPredicted RBP14.32□□□□□ -0.12
VPS53-207ENST00000570510 MINPP1Q9UNW1 487 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 NR2E3Q9Y5X4 410 aa14.32□□□□□ -0.12
VPS53-207ENST00000570510 WTIPA6NIX2 430 aaPredicted RBP14.31□□□□□ -0.12
VPS53-207ENST00000570510 RBM5P52756 815 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS53-207ENST00000570510 OPTNQ96CV9 577 aa14.31□□□□□ -0.12
VPS53-207ENST00000570510 PTPN18Q99952 460 aa14.31□□□□□ -0.12
VPS53-207ENST00000570510 ELP3Q9H9T3 547 aa14.31□□□□□ -0.12
VPS53-207ENST00000570510 LEMD3Q9Y2U8 911 aa14.31□□□□□ -0.12
VPS53-207ENST00000570510 SZT2Q5T011 3432 aa14.31□□□□□ -0.12
VPS53-207ENST00000570510 CLRN2A0PK11 232 aa14.3□□□□□ -0.12
VPS53-207ENST00000570510 F8W031 263 aaPredicted RBP14.3□□□□□ -0.12
VPS53-207ENST00000570510 CHL1O00533 1208 aa14.3□□□□□ -0.12
VPS53-207ENST00000570510 IGHMBP2P38935 993 aaKnown RBP14.3□□□□□ -0.12
VPS53-207ENST00000570510 TMPOP42166 694 aaKnown RBP14.3□□□□□ -0.12
VPS53-207ENST00000570510 NKX2-3Q8TAU0 364 aa14.3□□□□□ -0.12
VPS53-207ENST00000570510 PSME4Q14997 1843 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 CEP290O15078 2479 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 CCL15-CCL14A0A0B4J2E2 113 aa14.29□□□□□ -0.12
VPS53-207ENST00000570510 DDX58O95786 925 aaKnown RBP14.29□□□□□ -0.12
VPS53-207ENST00000570510 GTF2A2P52657 109 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms