RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 RBM27Q9P2N5 1060 aaKnown RBP23.75■■□□□ 1.39
CLK3-227ENST00000570296 TSPYL4Q9UJ04 414 aa23.75■■□□□ 1.39
CLK3-227ENST00000570296 SLC4A8Q2Y0W8 1093 aa23.74■■□□□ 1.39
CLK3-227ENST00000570296 WNK4Q96J92 1243 aa23.74■■□□□ 1.39
CLK3-227ENST00000570296 ZNF646O15015 1829 aaPredicted RBP23.74■■□□□ 1.39
CLK3-227ENST00000570296 COL1A1P02452 1464 aaPredicted RBP23.74■■□□□ 1.39
CLK3-227ENST00000570296 MAP3K11Q16584 847 aa23.73■■□□□ 1.39
CLK3-227ENST00000570296 SLC9C1Q4G0N8 1177 aa23.73■■□□□ 1.39
CLK3-227ENST00000570296 ISCA1Q9BUE6 129 aa23.73■■□□□ 1.39
CLK3-227ENST00000570296 ARHGEF6Q15052 776 aa23.72■■□□□ 1.39
CLK3-227ENST00000570296 NFE2L2Q16236 605 aa23.72■■□□□ 1.39
CLK3-227ENST00000570296 ZNF428Q96B54 188 aa23.72■■□□□ 1.39
CLK3-227ENST00000570296 MYO3BQ8WXR4 1341 aa23.72■■□□□ 1.39
CLK3-227ENST00000570296 XDHP47989 1333 aa23.71■■□□□ 1.39
CLK3-227ENST00000570296 UNCXA6NJT0 531 aa23.71■■□□□ 1.39
CLK3-227ENST00000570296 IRS4O14654 1257 aaPredicted RBP23.71■■□□□ 1.39
CLK3-227ENST00000570296 MNX1P50219 401 aaPredicted RBP23.71■■□□□ 1.39
CLK3-227ENST00000570296 CAP1Q01518 475 aa23.7■■□□□ 1.38
CLK3-227ENST00000570296 DACT2Q5SW24 774 aa23.7■■□□□ 1.38
CLK3-227ENST00000570296 PLBD2Q8NHP8 589 aa23.7■■□□□ 1.38
CLK3-227ENST00000570296 SASH1O94885 1247 aa23.69■■□□□ 1.38
CLK3-227ENST00000570296 PPP2R1AP30153 589 aa23.69■■□□□ 1.38
CLK3-227ENST00000570296 BABAM1Q9NWV8 329 aa23.69■■□□□ 1.38
CLK3-227ENST00000570296 PTCH2Q9Y6C5 1203 aa23.69■■□□□ 1.38
CLK3-227ENST00000570296 ATP2B4P23634 1241 aa23.68■■□□□ 1.38
CLK3-227ENST00000570296 SEC31BQ9NQW1 1179 aa23.68■■□□□ 1.38
CLK3-227ENST00000570296 LAMA3Q16787 3333 aa23.67■■□□□ 1.38
CLK3-227ENST00000570296 PPP1R12BO60237 982 aaPredicted RBP23.67■■□□□ 1.38
CLK3-227ENST00000570296 HSP90B1P14625 803 aaKnown RBP23.67■■□□□ 1.38
CLK3-227ENST00000570296 CLMNQ96JQ2 1002 aa23.67■■□□□ 1.38
CLK3-227ENST00000570296 PRO3102Q9H379 93 aa23.67■■□□□ 1.38
CLK3-227ENST00000570296 TRIM28Q13263 835 aaKnown RBP23.66■■□□□ 1.38
CLK3-227ENST00000570296 RTL5Q5HYW3 569 aaPredicted RBP23.66■■□□□ 1.38
CLK3-227ENST00000570296 STRIP1Q5VSL9 837 aa23.66■■□□□ 1.38
CLK3-227ENST00000570296 PLEKHF1Q96S99 279 aa23.66■■□□□ 1.38
CLK3-227ENST00000570296 FZD1Q9UP38 647 aa23.66■■□□□ 1.38
CLK3-227ENST00000570296 MED23Q9ULK4 1368 aa23.65■■□□□ 1.38
CLK3-227ENST00000570296 TESPA1A2RU30 521 aaPredicted RBP23.65■■□□□ 1.38
CLK3-227ENST00000570296 ATP5J2-PTCD1G3V325 749 aa23.65■■□□□ 1.38
CLK3-227ENST00000570296 ANKRD13DQ6ZTN6 518 aa23.65■■□□□ 1.38
CLK3-227ENST00000570296 MXD3Q9BW11 206 aa23.65■■□□□ 1.38
CLK3-227ENST00000570296 DPF3Q92784 378 aa23.64■■□□□ 1.37
CLK3-227ENST00000570296 ZBED3Q96IU2 234 aaPredicted RBP23.64■■□□□ 1.37
CLK3-227ENST00000570296 DEFB129Q9H1M3 183 aa23.64■■□□□ 1.37
CLK3-227ENST00000570296 SSC5DA1L4H1 1573 aa23.64■■□□□ 1.37
CLK3-227ENST00000570296 CCDC152Q4G0S7 254 aa23.63■■□□□ 1.37
CLK3-227ENST00000570296 PTPN18Q99952 460 aa23.63■■□□□ 1.37
CLK3-227ENST00000570296 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.63■■□□□ 1.37
CLK3-227ENST00000570296 PPP2R3BQ9Y5P8 575 aa23.63■■□□□ 1.37
CLK3-227ENST00000570296 ECM29Q5VYK3 1845 aa23.63■■□□□ 1.37
CLK3-227ENST00000570296 A0A1W2PPC1 479 aa23.62■■□□□ 1.37
CLK3-227ENST00000570296 GJA5P36382 358 aa23.61■■□□□ 1.37
CLK3-227ENST00000570296 ZBTB38Q8NAP3 1195 aaPredicted RBP23.61■■□□□ 1.37
CLK3-227ENST00000570296 FBXW7Q969H0 707 aa23.61■■□□□ 1.37
CLK3-227ENST00000570296 CHPF2Q9P2E5 772 aa23.61■■□□□ 1.37
CLK3-227ENST00000570296 MYCP01106 439 aaPredicted RBP23.6■■□□□ 1.37
CLK3-227ENST00000570296 ANKRD18AQ8IVF6 992 aa23.6■■□□□ 1.37
CLK3-227ENST00000570296 WTIPA6NIX2 430 aaPredicted RBP23.59■■□□□ 1.37
CLK3-227ENST00000570296 IREB2P48200 963 aaKnown RBP23.59■■□□□ 1.37
CLK3-227ENST00000570296 SUPT20HL1Q3ZLR7 823 aa23.59■■□□□ 1.37
CLK3-227ENST00000570296 COA1Q9GZY4 146 aa23.59■■□□□ 1.37
CLK3-227ENST00000570296 MAPK8IP3Q9UPT6 1336 aa23.59■■□□□ 1.37
CLK3-227ENST00000570296 SH3TC2Q8TF17 1288 aa23.58■■□□□ 1.37
CLK3-227ENST00000570296 HTATIP2Q9BUP3 242 aa23.58■■□□□ 1.37
CLK3-227ENST00000570296 PNNQ9H307 717 aaKnown RBP23.58■■□□□ 1.37
CLK3-227ENST00000570296 ZFYVE28Q9HCC9 887 aa23.58■■□□□ 1.37
CLK3-227ENST00000570296 ANKRD13AQ8IZ07 590 aa23.57■■□□□ 1.36
CLK3-227ENST00000570296 SHISA4Q96DD7 197 aa23.57■■□□□ 1.36
CLK3-227ENST00000570296 NR2E3Q9Y5X4 410 aa23.57■■□□□ 1.36
CLK3-227ENST00000570296 OTOFQ9HC10 1997 aa23.56■■□□□ 1.36
CLK3-227ENST00000570296 TAF1CQ15572 869 aaPredicted RBP23.56■■□□□ 1.36
CLK3-227ENST00000570296 KIAA0825Q8IV33 1275 aa23.56■■□□□ 1.36
CLK3-227ENST00000570296 ZNF804BA4D1E1 1349 aa23.56■■□□□ 1.36
CLK3-227ENST00000570296 PDE8AO60658 829 aa23.55■■□□□ 1.36
CLK3-227ENST00000570296 TTLL5Q6EMB2 1281 aa23.55■■□□□ 1.36
CLK3-227ENST00000570296 NKX2-3Q8TAU0 364 aa23.55■■□□□ 1.36
CLK3-227ENST00000570296 DBF4Q9UBU7 674 aaPredicted RBP23.55■■□□□ 1.36
CLK3-227ENST00000570296 UNC80Q8N2C7 3258 aa23.55■■□□□ 1.36
CLK3-227ENST00000570296 GNRH1P01148 92 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 PRMT2P55345 433 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 DLGAP5Q15398 846 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 UBE2Q1Q7Z7E8 422 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 MTMR14Q8NCE2 650 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 MS4A4AQ96JQ5 239 aa23.54■■□□□ 1.36
CLK3-227ENST00000570296 SOX1O00570 391 aaPredicted RBP23.53■■□□□ 1.36
CLK3-227ENST00000570296 USP2O75604 605 aaPredicted RBP23.53■■□□□ 1.36
CLK3-227ENST00000570296 HDGFL1Q5TGJ6 251 aa23.53■■□□□ 1.36
CLK3-227ENST00000570296 CDC5LQ99459 802 aaKnown RBP23.53■■□□□ 1.36
CLK3-227ENST00000570296 SPEF2Q9C093 1822 aa23.53■■□□□ 1.36
CLK3-227ENST00000570296 ZSWIM8A7E2V4 1837 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 ZBTB7BO15156 539 aaPredicted RBP23.52■■□□□ 1.36
CLK3-227ENST00000570296 PCCAP05165 728 aaPredicted RBP23.52■■□□□ 1.36
CLK3-227ENST00000570296 CCT4P50991 539 aaKnown RBP23.52■■□□□ 1.36
CLK3-227ENST00000570296 KIF22Q14807 665 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 BRI3BPQ8WY22 251 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 OPTNQ96CV9 577 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 CCDC85AQ96PX6 553 aaPredicted RBP23.52■■□□□ 1.36
CLK3-227ENST00000570296 HYPKQ9NX55 129 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 MINPP1Q9UNW1 487 aa23.52■■□□□ 1.36
CLK3-227ENST00000570296 HOXB7P09629 217 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms