RNA–Protein interactions for RNA: ENST00000569245.5

COMMD4-225, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-225ENST00000569245 FRAT1Q92837 279 aaPredicted RBP18.14■□□□□ 0.49
COMMD4-225ENST00000569245 TMEM88BA6NKF7 163 aa18.13■□□□□ 0.49
COMMD4-225ENST00000569245 SNAP23O00161 211 aa18.13■□□□□ 0.49
COMMD4-225ENST00000569245 IPO8O15397 1037 aaKnown RBP18.13■□□□□ 0.49
COMMD4-225ENST00000569245 HIRAP54198 1017 aaPredicted RBP18.13■□□□□ 0.49
COMMD4-225ENST00000569245 BCAR3O75815 825 aa18.12■□□□□ 0.49
COMMD4-225ENST00000569245 UBTFL1P0CB47 393 aaPredicted RBP18.12■□□□□ 0.49
COMMD4-225ENST00000569245 RABL6Q3YEC7 729 aaPredicted RBP18.12■□□□□ 0.49
COMMD4-225ENST00000569245 ANKRD44Q8N8A2 993 aa18.12■□□□□ 0.49
COMMD4-225ENST00000569245 AGBL3Q8NEM8 1001 aa18.12■□□□□ 0.49
COMMD4-225ENST00000569245 ZC3H15Q8WU90 426 aaKnown RBP18.12■□□□□ 0.49
COMMD4-225ENST00000569245 ARHGAP45Q92619 1136 aa18.12■□□□□ 0.49
COMMD4-225ENST00000569245 TRAF5O00463 557 aa18.11■□□□□ 0.49
COMMD4-225ENST00000569245 RRP1P56182 461 aaKnown RBP18.11■□□□□ 0.49
COMMD4-225ENST00000569245 PUS3Q9BZE2 481 aaKnown RBP18.11■□□□□ 0.49
COMMD4-225ENST00000569245 MKRN1Q9UHC7 482 aaKnown RBP18.11■□□□□ 0.49
COMMD4-225ENST00000569245 SPEF2Q9C093 1822 aa18.11■□□□□ 0.49
COMMD4-225ENST00000569245 USP17L8P0C7I0 530 aa18.1■□□□□ 0.49
COMMD4-225ENST00000569245 KIF4BQ2VIQ3 1234 aa18.1■□□□□ 0.49
COMMD4-225ENST00000569245 TTLL5Q6EMB2 1281 aa18.1■□□□□ 0.49
COMMD4-225ENST00000569245 HDAC5Q9UQL6 1122 aa18.1■□□□□ 0.49
COMMD4-225ENST00000569245 ADAMTSL1Q8N6G6 1762 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 MROH5Q6ZUA9 1318 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 EGFRP00533 1210 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 FMR1Q06787 632 aaKnown RBP eCLIP18.09■□□□□ 0.49
COMMD4-225ENST00000569245 STRIP1Q5VSL9 837 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 ZNF804AQ7Z570 1209 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.09■□□□□ 0.49
COMMD4-225ENST00000569245 MXD3Q9BW11 206 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 GLIS2Q9BZE0 524 aaPredicted RBP18.09■□□□□ 0.49
COMMD4-225ENST00000569245 CD209Q9NNX6 404 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 PGAP2Q9UHJ9 254 aa18.09■□□□□ 0.49
COMMD4-225ENST00000569245 ABT1Q9ULW3 272 aaKnown RBP18.09■□□□□ 0.49
COMMD4-225ENST00000569245 GTF2IP78347 998 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 METTL24Q5JXM2 366 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 DACT2Q5SW24 774 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 CDC37L1Q7L3B6 337 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 OGFOD1Q8N543 542 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 KLHDC4Q8TBB5 520 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 DCPSQ96C86 337 aaKnown RBP18.08■□□□□ 0.48
COMMD4-225ENST00000569245 RIPOR2Q9Y4F9 1068 aa18.08■□□□□ 0.48
COMMD4-225ENST00000569245 ZNF280AP59817 542 aaPredicted RBP18.07■□□□□ 0.48
COMMD4-225ENST00000569245 LRRC24Q50LG9 513 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 INTS3Q68E01 1043 aaKnown RBP18.07■□□□□ 0.48
COMMD4-225ENST00000569245 ATF7IPQ6VMQ6 1270 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 C15orf52Q6ZUT6 534 aaKnown RBP18.07■□□□□ 0.48
COMMD4-225ENST00000569245 USP48Q86UV5 1035 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 CLUAP1Q96AJ1 413 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 GMLQ99445 158 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 ZNF408Q9H9D4 720 aa18.07■□□□□ 0.48
COMMD4-225ENST00000569245 MYO3BQ8WXR4 1341 aa18.06■□□□□ 0.48
COMMD4-225ENST00000569245 CELF2O95319 508 aaKnown RBP18.06■□□□□ 0.48
COMMD4-225ENST00000569245 TRIM27P14373 513 aa18.06■□□□□ 0.48
COMMD4-225ENST00000569245 UBE4AQ14139 1066 aa18.06■□□□□ 0.48
COMMD4-225ENST00000569245 KRT26Q7Z3Y9 468 aa18.06■□□□□ 0.48
COMMD4-225ENST00000569245 MYOZ2Q9NPC6 264 aa18.06■□□□□ 0.48
COMMD4-225ENST00000569245 LRRFIP2Q9Y608 721 aaKnown RBP18.06■□□□□ 0.48
COMMD4-225ENST00000569245 SCN9AQ15858 1988 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 GNAI3P08754 354 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 SCARF1Q14162 830 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 ZKSCAN2Q63HK3 967 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 VPS37DQ86XT2 251 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 JMYQ8N9B5 988 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 MEIS3Q99687 375 aa18.05■□□□□ 0.48
COMMD4-225ENST00000569245 IRS2Q9Y4H2 1338 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 HIBADHP31937 336 aaKnown RBP18.04■□□□□ 0.48
COMMD4-225ENST00000569245 GYG1P46976 350 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 DEFB115Q30KQ5 88 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 CST9Q5W186 159 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 PAXIP1Q6ZW49 1069 aaPredicted RBP18.04■□□□□ 0.48
COMMD4-225ENST00000569245 KIAA0825Q8IV33 1275 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 SULF1Q8IWU6 871 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 GGA3Q9NZ52 723 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 HDAC9Q9UKV0 1011 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 TNNQ9UQP3 1299 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 PCNTO95613 3336 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 CNTNAP1P78357 1384 aa18.04■□□□□ 0.48
COMMD4-225ENST00000569245 IL1R1P14778 569 aa18.03■□□□□ 0.48
COMMD4-225ENST00000569245 SIL1Q9H173 461 aa18.03■□□□□ 0.48
COMMD4-225ENST00000569245 JAG2Q9Y219 1238 aa18.03■□□□□ 0.48
COMMD4-225ENST00000569245 ZNF609O15014 1411 aa18.03■□□□□ 0.48
COMMD4-225ENST00000569245 ASTN2O75129 1339 aaPredicted RBP18.02■□□□□ 0.48
COMMD4-225ENST00000569245 ADM5C9JUS6 153 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 EYA2O00167 538 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 PDE8BO95263 885 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 NEFLP07196 543 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 RFX5P48382 616 aaPredicted RBP18.02■□□□□ 0.48
COMMD4-225ENST00000569245 VEGFBP49765 207 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 PTPN12Q05209 780 aaKnown RBP18.02■□□□□ 0.48
COMMD4-225ENST00000569245 CAVIN4Q5BKX8 364 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 ANGEL2Q5VTE6 544 aaKnown RBP18.02■□□□□ 0.48
COMMD4-225ENST00000569245 DLK2Q6UY11 383 aa18.02■□□□□ 0.48
COMMD4-225ENST00000569245 FTSJ3Q8IY81 847 aaKnown RBP18.02■□□□□ 0.48
COMMD4-225ENST00000569245 F8W031 263 aaPredicted RBP18.01■□□□□ 0.47
COMMD4-225ENST00000569245 FRAT2O75474 233 aaPredicted RBP18.01■□□□□ 0.47
COMMD4-225ENST00000569245 MMP14P50281 582 aa18.01■□□□□ 0.47
COMMD4-225ENST00000569245 GRM1Q13255 1194 aa18.01■□□□□ 0.47
COMMD4-225ENST00000569245 PDE3AQ14432 1141 aa18.01■□□□□ 0.47
COMMD4-225ENST00000569245 FAM84BQ96KN1 310 aaPredicted RBP18.01■□□□□ 0.47
COMMD4-225ENST00000569245 RASSF10A6NK89 507 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms