RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CABLES1Q8TDN4 633 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 ERCC6LQ2NKX8 1250 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 DPCR1Q3MIW9 517 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 METTL22Q9BUU2 404 aaPredicted RBP16.86■□□□□ 0.29
VPS35-210ENST00000568784 PCDHA7Q9UN72 937 aa16.86■□□□□ 0.29
VPS35-210ENST00000568784 PLEKHG1Q9ULL1 1385 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 TTC39AQ5SRH9 613 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 FEZ1Q99689 392 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 NDUFA8P51970 172 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 PTPN12Q05209 780 aaKnown RBP16.85■□□□□ 0.29
VPS35-210ENST00000568784 TRDNQ13061 729 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 KRT222Q8N1A0 295 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 E7EWF7 191 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 SLU7O95391 586 aaKnown RBP16.85■□□□□ 0.29
VPS35-210ENST00000568784 IL17RAQ96F46 866 aa16.85■□□□□ 0.29
VPS35-210ENST00000568784 TECPR2O15040 1411 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 HMGB1P09429 215 aaKnown RBP16.84■□□□□ 0.29
VPS35-210ENST00000568784 KBTBD3Q8NAB2 608 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 PODXL2Q9NZ53 605 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 CEP126Q9P2H0 1117 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 CLIC4Q9Y696 253 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 NEMFO60524 1076 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 ANKRD7Q92527 254 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 AXIN2Q9Y2T1 843 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 CAVIN2O95810 425 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 C3P01024 1663 aa16.84■□□□□ 0.29
VPS35-210ENST00000568784 SPTLC2O15270 562 aa16.83■□□□□ 0.29
VPS35-210ENST00000568784 IQCB1Q15051 598 aa16.83■□□□□ 0.29
VPS35-210ENST00000568784 ZNF397Q8NF99 534 aaPredicted RBP16.83■□□□□ 0.29
VPS35-210ENST00000568784 ST7Q9NRC1 585 aa16.83■□□□□ 0.29
VPS35-210ENST00000568784 UBXN4Q92575 508 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 ZSWIM4Q9H7M6 989 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 RIMBP3CA6NJZ7 1639 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 RIMBP3BA6NNM3 1639 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 RIMBP3Q9UFD9 1639 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 PFKFB2O60825 505 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 MICU3Q86XE3 530 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 DDX17Q92841 729 aaKnown RBP16.83■□□□□ 0.28
VPS35-210ENST00000568784 CTNNA3Q9UI47 895 aa16.83■□□□□ 0.28
VPS35-210ENST00000568784 IMMTQ16891 758 aaKnown RBP16.82■□□□□ 0.28
VPS35-210ENST00000568784 RRP12Q5JTH9 1297 aaKnown RBP16.82■□□□□ 0.28
VPS35-210ENST00000568784 LRRC24Q50LG9 513 aa16.82■□□□□ 0.28
VPS35-210ENST00000568784 CTIFO43310 598 aaKnown RBP16.82■□□□□ 0.28
VPS35-210ENST00000568784 SNRPA1P09661 255 aaKnown RBP16.82■□□□□ 0.28
VPS35-210ENST00000568784 ARHGAP29Q52LW3 1261 aa16.82■□□□□ 0.28
VPS35-210ENST00000568784 SPECC1Q5M775 1068 aa16.82■□□□□ 0.28
VPS35-210ENST00000568784 FBXO38Q6PIJ6 1188 aa16.82■□□□□ 0.28
VPS35-210ENST00000568784 RCOR1Q9UKL0 485 aa16.82■□□□□ 0.28
VPS35-210ENST00000568784 PRC1O43663 620 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 HSPD1P10809 573 aaKnown RBP16.81■□□□□ 0.28
VPS35-210ENST00000568784 GSDMDP57764 484 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 CCDC158Q5M9N0 1113 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 KCNB2Q92953 911 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 MRFAP1L1Q96HT8 127 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 IDH1O75874 414 aaKnown RBP16.81■□□□□ 0.28
VPS35-210ENST00000568784 PDIA3P30101 505 aaKnown RBP16.81■□□□□ 0.28
VPS35-210ENST00000568784 KMT5BQ4FZB7 885 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 UTP14CQ5TAP6 766 aaKnown RBP16.81■□□□□ 0.28
VPS35-210ENST00000568784 CEMIPQ8WUJ3 1361 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 TRIM29Q14134 588 aa16.81■□□□□ 0.28
VPS35-210ENST00000568784 OLFM4Q6UX06 510 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 MON2Q7Z3U7 1717 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 DHX16O60231 1041 aaKnown RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 UBASH3AP57075 661 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 CCDC57Q2TAC2 916 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 NAA16Q6N069 864 aaPredicted RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 UTP14AQ9BVJ6 771 aaKnown RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 SPATA31D1Q6ZQQ2 1576 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 MED23Q9ULK4 1368 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 A0A1B0GUL7 405 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 KIF20AO95235 890 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 TRHP20396 242 aaPredicted RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 AIFM3Q96NN9 605 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 HAUS7Q99871 368 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 PUS3Q9BZE2 481 aaKnown RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 ZNF609O15014 1411 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 ZNF202O95125 648 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 ATP1A3P13637 1013 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 CPLX2Q6PUV4 134 aaKnown RBP16.8■□□□□ 0.28
VPS35-210ENST00000568784 KRT28Q7Z3Y7 464 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 COPRSQ9NQ92 184 aa16.8■□□□□ 0.28
VPS35-210ENST00000568784 CTDNEP1O95476 244 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 TEX35Q5T0J7 233 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 DHX40Q8IX18 779 aaKnown RBP16.79■□□□□ 0.28
VPS35-210ENST00000568784 ERO1AQ96HE7 468 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 KIAA1468Q9P260 1216 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 SYKP43405 635 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 PI16Q6UXB8 463 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 MYL10Q9BUA6 226 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 SLC52A2Q9HAB3 445 aa16.79■□□□□ 0.28
VPS35-210ENST00000568784 RNF113AO15541 343 aaKnown RBP16.78■□□□□ 0.28
VPS35-210ENST00000568784 TOP1P11387 765 aaKnown RBP16.78■□□□□ 0.28
VPS35-210ENST00000568784 NPHP4O75161 1426 aaPredicted RBP16.78■□□□□ 0.28
VPS35-210ENST00000568784 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.78■□□□□ 0.28
VPS35-210ENST00000568784 ZNF213O14771 459 aa16.78■□□□□ 0.28
VPS35-210ENST00000568784 A1BGP04217 495 aa16.78■□□□□ 0.28
VPS35-210ENST00000568784 TTLL7Q6ZT98 887 aa16.78■□□□□ 0.28
VPS35-210ENST00000568784 PHKBQ93100 1093 aa16.78■□□□□ 0.28
VPS35-210ENST00000568784 LLPHQ9BRT6 129 aaKnown RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms