RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 ANKRD2Q9GZV1 360 aa21.51■■□□□ 1.03
CLN3-231ENST00000568422 LEMD3Q9Y2U8 911 aa21.51■■□□□ 1.03
CLN3-231ENST00000568422 PITPNM2Q9BZ72 1349 aa21.51■■□□□ 1.03
CLN3-231ENST00000568422 VAMP4O75379 141 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 MMP14P50281 582 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 SCARF1Q14162 830 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 DLK2Q6UY11 383 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 COA1Q9GZY4 146 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 MYOZ2Q9NPC6 264 aa21.5■■□□□ 1.03
CLN3-231ENST00000568422 CSF1RP07333 972 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 ITGA6P23229 1130 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 CASP7P55210 303 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 ABHD8Q96I13 439 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 MPHOSPH8Q99549 860 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 ZNF646O15015 1829 aaPredicted RBP21.49■■□□□ 1.03
CLN3-231ENST00000568422 MYO3BQ8WXR4 1341 aa21.49■■□□□ 1.03
CLN3-231ENST00000568422 ZNF316A6NFI3 1004 aaPredicted RBP21.48■■□□□ 1.03
CLN3-231ENST00000568422 ANGEL2Q5VTE6 544 aaKnown RBP21.48■■□□□ 1.03
CLN3-231ENST00000568422 OGFOD1Q8N543 542 aa21.48■■□□□ 1.03
CLN3-231ENST00000568422 CDCA5Q96FF9 252 aa21.48■■□□□ 1.03
CLN3-231ENST00000568422 FAM155AB1AL88 458 aaPredicted RBP21.47■■□□□ 1.03
CLN3-231ENST00000568422 ZNF157P51786 506 aaPredicted RBP21.47■■□□□ 1.03
CLN3-231ENST00000568422 FKBP1BP68106 108 aa21.47■■□□□ 1.03
CLN3-231ENST00000568422 EXOSC9Q06265 439 aaKnown RBP21.47■■□□□ 1.03
CLN3-231ENST00000568422 STRIP1Q5VSL9 837 aa21.47■■□□□ 1.03
CLN3-231ENST00000568422 TSKSQ9UJT2 592 aa21.47■■□□□ 1.03
CLN3-231ENST00000568422 ZNF804BA4D1E1 1349 aa21.47■■□□□ 1.03
CLN3-231ENST00000568422 ASTN2O75129 1339 aaPredicted RBP21.47■■□□□ 1.03
CLN3-231ENST00000568422 WTIPA6NIX2 430 aaPredicted RBP21.46■■□□□ 1.03
CLN3-231ENST00000568422 FAM161AQ3B820 660 aa21.46■■□□□ 1.03
CLN3-231ENST00000568422 DACT2Q5SW24 774 aa21.46■■□□□ 1.03
CLN3-231ENST00000568422 SALL2Q9Y467 1007 aaPredicted RBP21.46■■□□□ 1.03
CLN3-231ENST00000568422 AKAP11Q9UKA4 1901 aa21.46■■□□□ 1.03
CLN3-231ENST00000568422 CASP8AP2Q9UKL3 1982 aa21.46■■□□□ 1.03
CLN3-231ENST00000568422 PAPPA2Q9BXP8 1791 aa21.44■■□□□ 1.02
CLN3-231ENST00000568422 ANKRD18BA2A2Z9 1011 aa21.44■■□□□ 1.02
CLN3-231ENST00000568422 REM2Q8IYK8 340 aaPredicted RBP21.44■■□□□ 1.02
CLN3-231ENST00000568422 ZIC5Q96T25 663 aa21.44■■□□□ 1.02
CLN3-231ENST00000568422 SAGE1Q9NXZ1 904 aa21.44■■□□□ 1.02
CLN3-231ENST00000568422 KCNJ4P48050 445 aa21.43■■□□□ 1.02
CLN3-231ENST00000568422 TTLL5Q6EMB2 1281 aa21.43■■□□□ 1.02
CLN3-231ENST00000568422 TXNRD3Q86VQ6 643 aa21.43■■□□□ 1.02
CLN3-231ENST00000568422 SLC10A3P09131 477 aa21.42■■□□□ 1.02
CLN3-231ENST00000568422 KIF23Q02241 960 aaPredicted RBP21.42■■□□□ 1.02
CLN3-231ENST00000568422 CHRNDQ07001 517 aa21.42■■□□□ 1.02
CLN3-231ENST00000568422 IFIT5Q13325 482 aaKnown RBP21.42■■□□□ 1.02
CLN3-231ENST00000568422 BEND3Q5T5X7 828 aa21.42■■□□□ 1.02
CLN3-231ENST00000568422 FBXW7Q969H0 707 aa21.42■■□□□ 1.02
CLN3-231ENST00000568422 A0A1B0GUL6 1792 aa21.41■■□□□ 1.02
CLN3-231ENST00000568422 HDAC9Q9UKV0 1011 aa21.41■■□□□ 1.02
CLN3-231ENST00000568422 WNT10BO00744 389 aa21.4■■□□□ 1.02
CLN3-231ENST00000568422 FOXO4P98177 505 aa21.4■■□□□ 1.02
CLN3-231ENST00000568422 NBPF9Q3BBW0 867 aa21.4■■□□□ 1.02
CLN3-231ENST00000568422 F6X3S4 739 aa21.39■■□□□ 1.01
CLN3-231ENST00000568422 C15orf52Q6ZUT6 534 aaKnown RBP21.39■■□□□ 1.01
CLN3-231ENST00000568422 MXD3Q9BW11 206 aa21.39■■□□□ 1.01
CLN3-231ENST00000568422 SPINK5Q9NQ38 1064 aaPredicted RBP21.39■■□□□ 1.01
CLN3-231ENST00000568422 GRM8O00222 908 aa21.38■■□□□ 1.01
CLN3-231ENST00000568422 KLRK1P26718 216 aa21.38■■□□□ 1.01
CLN3-231ENST00000568422 CD209Q9NNX6 404 aa21.38■■□□□ 1.01
CLN3-231ENST00000568422 CHMP3Q9Y3E7 222 aa21.38■■□□□ 1.01
CLN3-231ENST00000568422 CCDC85CA6NKD9 419 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 NF2P35240 595 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 GTF2IP78347 998 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 RASAL3Q86YV0 1011 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 FAM9BQ8IZU0 186 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 CSRNP1Q96S65 589 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 MCOLN1Q9GZU1 580 aa21.37■■□□□ 1.01
CLN3-231ENST00000568422 ALDH1L1O75891 902 aa21.36■■□□□ 1.01
CLN3-231ENST00000568422 CCDC57Q2TAC2 916 aa21.36■■□□□ 1.01
CLN3-231ENST00000568422 LMBR1LQ6UX01 489 aa21.36■■□□□ 1.01
CLN3-231ENST00000568422 APOBEC3FQ8IUX4 373 aaKnown RBP21.36■■□□□ 1.01
CLN3-231ENST00000568422 RNF186Q9NXI6 227 aa21.36■■□□□ 1.01
CLN3-231ENST00000568422 C9orf78Q9NZ63 289 aaPredicted RBP21.36■■□□□ 1.01
CLN3-231ENST00000568422 ECM29Q5VYK3 1845 aa21.36■■□□□ 1.01
CLN3-231ENST00000568422 IRS2Q9Y4H2 1338 aa21.35■■□□□ 1.01
CLN3-231ENST00000568422 TRPA1O75762 1119 aa21.35■■□□□ 1.01
CLN3-231ENST00000568422 DGKZQ13574 1117 aa21.35■■□□□ 1.01
CLN3-231ENST00000568422 ZNF804AQ7Z570 1209 aa21.35■■□□□ 1.01
CLN3-231ENST00000568422 KIAA0825Q8IV33 1275 aa21.35■■□□□ 1.01
CLN3-231ENST00000568422 TAF5LO75529 589 aa21.34■■□□□ 1.01
CLN3-231ENST00000568422 SASH1O94885 1247 aa21.34■■□□□ 1.01
CLN3-231ENST00000568422 TAF7LQ5H9L4 462 aa21.34■■□□□ 1.01
CLN3-231ENST00000568422 LDHAL6AQ6ZMR3 332 aa21.34■■□□□ 1.01
CLN3-231ENST00000568422 SRCIN1Q9C0H9 1055 aa21.34■■□□□ 1.01
CLN3-231ENST00000568422 SCAF8Q9UPN6 1271 aaKnown RBP21.34■■□□□ 1.01
CLN3-231ENST00000568422 UBE2Q2LH0YL09 131 aa21.33■■□□□ 1.01
CLN3-231ENST00000568422 IL1R1P14778 569 aa21.33■■□□□ 1.01
CLN3-231ENST00000568422 FKBP1AP62942 108 aaKnown RBP21.33■■□□□ 1.01
CLN3-231ENST00000568422 TTLL12Q14166 644 aaPredicted RBP21.33■■□□□ 1.01
CLN3-231ENST00000568422 HELBQ8NG08 1087 aaPredicted RBP21.33■■□□□ 1.01
CLN3-231ENST00000568422 ZBED3Q96IU2 234 aaPredicted RBP21.33■■□□□ 1.01
CLN3-231ENST00000568422 COL1A1P02452 1464 aaPredicted RBP21.32■■□□□ 1
CLN3-231ENST00000568422 DLGAP5Q15398 846 aa21.32■■□□□ 1
CLN3-231ENST00000568422 PRAMEF18Q5VWM3 479 aa21.32■■□□□ 1
CLN3-231ENST00000568422 SLC4A10Q6U841 1118 aa21.32■■□□□ 1
CLN3-231ENST00000568422 MTMR14Q8NCE2 650 aa21.32■■□□□ 1
CLN3-231ENST00000568422 CNNM1Q9NRU3 951 aa21.32■■□□□ 1
CLN3-231ENST00000568422 RGS19P49795 217 aa21.31■■□□□ 1
CLN3-231ENST00000568422 EPHA10Q5JZY3 1008 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms