RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 ZNF280AP59817 542 aaPredicted RBP23.49■■□□□ 1.35
CLN3-227ENST00000567495 CDC37L1Q7L3B6 337 aa23.49■■□□□ 1.35
CLN3-227ENST00000567495 SAMD7Q7Z3H4 446 aa23.49■■□□□ 1.35
CLN3-227ENST00000567495 TXNRD3Q86VQ6 643 aa23.49■■□□□ 1.35
CLN3-227ENST00000567495 ANKRD44Q8N8A2 993 aa23.49■■□□□ 1.35
CLN3-227ENST00000567495 MYO3BQ8WXR4 1341 aa23.49■■□□□ 1.35
CLN3-227ENST00000567495 SHTN1A0MZ66 631 aa23.48■■□□□ 1.35
CLN3-227ENST00000567495 TAF5LO75529 589 aa23.48■■□□□ 1.35
CLN3-227ENST00000567495 USP17L8P0C7I0 530 aa23.48■■□□□ 1.35
CLN3-227ENST00000567495 HELBQ8NG08 1087 aaPredicted RBP23.48■■□□□ 1.35
CLN3-227ENST00000567495 GMLQ99445 158 aa23.48■■□□□ 1.35
CLN3-227ENST00000567495 UBTFL1P0CB47 393 aaPredicted RBP23.47■■□□□ 1.35
CLN3-227ENST00000567495 TBC1D10BQ4KMP7 808 aaPredicted RBP23.47■■□□□ 1.35
CLN3-227ENST00000567495 MROH5Q6ZUA9 1318 aa23.47■■□□□ 1.35
CLN3-227ENST00000567495 UBE4AQ14139 1066 aa23.46■■□□□ 1.35
CLN3-227ENST00000567495 KIF4BQ2VIQ3 1234 aa23.46■■□□□ 1.35
CLN3-227ENST00000567495 DACT2Q5SW24 774 aa23.46■■□□□ 1.35
CLN3-227ENST00000567495 ZNF804AQ7Z570 1209 aa23.46■■□□□ 1.35
CLN3-227ENST00000567495 ZBED9Q6R2W3 1325 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 KLRK1P26718 216 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 RBM26Q5T8P6 1007 aaKnown RBP23.45■■□□□ 1.34
CLN3-227ENST00000567495 TTLL5Q6EMB2 1281 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 OGFOD1Q8N543 542 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 CD209Q9NNX6 404 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 RIPOR2Q9Y4F9 1068 aa23.45■■□□□ 1.34
CLN3-227ENST00000567495 CNTNAP1P78357 1384 aa23.44■■□□□ 1.34
CLN3-227ENST00000567495 PLIN1O60240 522 aa23.44■■□□□ 1.34
CLN3-227ENST00000567495 INTS3Q68E01 1043 aaKnown RBP23.44■■□□□ 1.34
CLN3-227ENST00000567495 DCPSQ96C86 337 aaKnown RBP23.44■■□□□ 1.34
CLN3-227ENST00000567495 GLIS2Q9BZE0 524 aaPredicted RBP23.44■■□□□ 1.34
CLN3-227ENST00000567495 MKRN1Q9UHC7 482 aaKnown RBP23.44■■□□□ 1.34
CLN3-227ENST00000567495 IRS2Q9Y4H2 1338 aa23.43■■□□□ 1.34
CLN3-227ENST00000567495 RASSF10A6NK89 507 aa23.43■■□□□ 1.34
CLN3-227ENST00000567495 TRAF5O00463 557 aa23.43■■□□□ 1.34
CLN3-227ENST00000567495 ABT1Q9ULW3 272 aaKnown RBP23.43■■□□□ 1.34
CLN3-227ENST00000567495 SNAP23O00161 211 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 EGFRP00533 1210 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 IL1R1P14778 569 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 ATF7IPQ6VMQ6 1270 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 KRT26Q7Z3Y9 468 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 FBXW7Q969H0 707 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 MYOZ2Q9NPC6 264 aa23.42■■□□□ 1.34
CLN3-227ENST00000567495 SCN9AQ15858 1988 aa23.41■■□□□ 1.34
CLN3-227ENST00000567495 GTF2IP78347 998 aa23.41■■□□□ 1.34
CLN3-227ENST00000567495 CST9Q5W186 159 aa23.41■■□□□ 1.34
CLN3-227ENST00000567495 PUS3Q9BZE2 481 aaKnown RBP23.41■■□□□ 1.34
CLN3-227ENST00000567495 GNAI3P08754 354 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 DEFB115Q30KQ5 88 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 METTL24Q5JXM2 366 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 USP48Q86UV5 1035 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 SULF1Q8IWU6 871 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 FBXO3Q9UK99 471 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 HDAC9Q9UKV0 1011 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 SPEF2Q9C093 1822 aa23.4■■□□□ 1.34
CLN3-227ENST00000567495 BCAR3O75815 825 aa23.39■■□□□ 1.33
CLN3-227ENST00000567495 CELF2O95319 508 aaKnown RBP23.39■■□□□ 1.33
CLN3-227ENST00000567495 TRIM27P14373 513 aa23.39■■□□□ 1.33
CLN3-227ENST00000567495 FRAT1Q92837 279 aaPredicted RBP23.39■■□□□ 1.33
CLN3-227ENST00000567495 SASH1O94885 1247 aa23.38■■□□□ 1.33
CLN3-227ENST00000567495 PDE8BO95263 885 aa23.38■■□□□ 1.33
CLN3-227ENST00000567495 HIBADHP31937 336 aaKnown RBP23.38■■□□□ 1.33
CLN3-227ENST00000567495 FKBP1AP62942 108 aaKnown RBP23.38■■□□□ 1.33
CLN3-227ENST00000567495 FMR1Q06787 632 aaKnown RBP eCLIP23.38■■□□□ 1.33
CLN3-227ENST00000567495 SCARF1Q14162 830 aa23.38■■□□□ 1.33
CLN3-227ENST00000567495 LRRC24Q50LG9 513 aa23.38■■□□□ 1.33
CLN3-227ENST00000567495 GGA3Q9NZ52 723 aa23.38■■□□□ 1.33
CLN3-227ENST00000567495 EYA2O00167 538 aa23.37■■□□□ 1.33
CLN3-227ENST00000567495 RFX5P48382 616 aaPredicted RBP23.37■■□□□ 1.33
CLN3-227ENST00000567495 ZKSCAN2Q63HK3 967 aa23.37■■□□□ 1.33
CLN3-227ENST00000567495 MXD3Q9BW11 206 aa23.37■■□□□ 1.33
CLN3-227ENST00000567495 LRRFIP2Q9Y608 721 aaKnown RBP23.37■■□□□ 1.33
CLN3-227ENST00000567495 TLL2Q9Y6L7 1015 aa23.37■■□□□ 1.33
CLN3-227ENST00000567495 PITPNM2Q9BZ72 1349 aa23.36■■□□□ 1.33
CLN3-227ENST00000567495 VEGFBP49765 207 aa23.36■■□□□ 1.33
CLN3-227ENST00000567495 MEIS3Q99687 375 aa23.36■■□□□ 1.33
CLN3-227ENST00000567495 ECE1P42892 770 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 PTPN12Q05209 780 aaKnown RBP23.35■■□□□ 1.33
CLN3-227ENST00000567495 CAVIN4Q5BKX8 364 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 VPS37DQ86XT2 251 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 VGLL2Q8N8G2 317 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 TDRD7Q8NHU6 1098 aaKnown RBP23.35■■□□□ 1.33
CLN3-227ENST00000567495 KLHDC4Q8TBB5 520 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 HHIPL1Q96JK4 782 aa23.35■■□□□ 1.33
CLN3-227ENST00000567495 FAM84BQ96KN1 310 aaPredicted RBP23.35■■□□□ 1.33
CLN3-227ENST00000567495 CIAO1O76071 339 aa23.34■■□□□ 1.33
CLN3-227ENST00000567495 PUM3Q15397 648 aaKnown RBP23.34■■□□□ 1.33
CLN3-227ENST00000567495 ANGEL2Q5VTE6 544 aaKnown RBP23.34■■□□□ 1.33
CLN3-227ENST00000567495 SAPCD2Q86UD0 394 aa23.34■■□□□ 1.33
CLN3-227ENST00000567495 KIAA0825Q8IV33 1275 aa23.34■■□□□ 1.33
CLN3-227ENST00000567495 FAM205AQ6ZU69 1335 aa23.33■■□□□ 1.33
CLN3-227ENST00000567495 PSME4Q14997 1843 aa23.33■■□□□ 1.33
CLN3-227ENST00000567495 IFIT1P09914 478 aaKnown RBP23.33■■□□□ 1.33
CLN3-227ENST00000567495 GYG1P46976 350 aa23.33■■□□□ 1.33
CLN3-227ENST00000567495 FBXO33Q7Z6M2 555 aa23.33■■□□□ 1.33
CLN3-227ENST00000567495 ZNF408Q9H9D4 720 aa23.33■■□□□ 1.33
CLN3-227ENST00000567495 WNT10BO00744 389 aa23.32■■□□□ 1.32
CLN3-227ENST00000567495 ASTN2O75129 1339 aaPredicted RBP23.32■■□□□ 1.32
CLN3-227ENST00000567495 WDR33Q9C0J8 1336 aaKnown RBP23.32■■□□□ 1.32
CLN3-227ENST00000567495 ADM5C9JUS6 153 aa23.31■■□□□ 1.32
CLN3-227ENST00000567495 MTX1Q13505 466 aa23.31■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms