RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 EIF6P56537 245 aaKnown RBP24.29■■□□□ 1.48
CLN3-225ENST00000566824 TFCP2Q12800 502 aa24.29■■□□□ 1.48
CLN3-225ENST00000566824 UBE4AQ14139 1066 aa24.29■■□□□ 1.48
CLN3-225ENST00000566824 C15orf52Q6ZUT6 534 aaKnown RBP24.29■■□□□ 1.48
CLN3-225ENST00000566824 GJA3Q9Y6H8 435 aa24.29■■□□□ 1.48
CLN3-225ENST00000566824 SASH1O94885 1247 aa24.28■■□□□ 1.48
CLN3-225ENST00000566824 SURF6O75683 361 aaKnown RBP24.27■■□□□ 1.48
CLN3-225ENST00000566824 GYG1P46976 350 aa24.27■■□□□ 1.48
CLN3-225ENST00000566824 IRX6P78412 446 aaPredicted RBP24.27■■□□□ 1.48
CLN3-225ENST00000566824 DPY19L2Q6NUT2 758 aa24.27■■□□□ 1.48
CLN3-225ENST00000566824 RPAP2Q8IXW5 612 aaPredicted RBP24.27■■□□□ 1.48
CLN3-225ENST00000566824 CHMP4BQ9H444 224 aaKnown RBP24.27■■□□□ 1.48
CLN3-225ENST00000566824 RRAGCQ9HB90 399 aa24.27■■□□□ 1.48
CLN3-225ENST00000566824 CEP126Q9P2H0 1117 aa24.27■■□□□ 1.48
CLN3-225ENST00000566824 PCDHB15Q9Y5E8 787 aa24.27■■□□□ 1.48
CLN3-225ENST00000566824 G3V3G9 751 aa24.26■■□□□ 1.47
CLN3-225ENST00000566824 DCAF8Q5TAQ9 597 aa24.26■■□□□ 1.47
CLN3-225ENST00000566824 FAM84BQ96KN1 310 aaPredicted RBP24.26■■□□□ 1.47
CLN3-225ENST00000566824 GPBP1L1Q9HC44 474 aaPredicted RBP24.26■■□□□ 1.47
CLN3-225ENST00000566824 NOP58Q9Y2X3 529 aaKnown RBP24.26■■□□□ 1.47
CLN3-225ENST00000566824 ARAP2Q8WZ64 1704 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 KDM2BQ8NHM5 1336 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 PSMD14O00487 310 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 G3BP1Q13283 466 aaKnown RBP eCLIP24.25■■□□□ 1.47
CLN3-225ENST00000566824 PUM3Q15397 648 aaKnown RBP24.25■■□□□ 1.47
CLN3-225ENST00000566824 CIAPIN1Q6FI81 312 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 GPC2Q8N158 579 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 EXOC6Q8TAG9 804 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 COA1Q9GZY4 146 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 EXOC6BQ9Y2D4 811 aa24.25■■□□□ 1.47
CLN3-225ENST00000566824 ATP2B3Q16720 1220 aa24.24■■□□□ 1.47
CLN3-225ENST00000566824 MXD3Q9BW11 206 aa24.24■■□□□ 1.47
CLN3-225ENST00000566824 CD209Q9NNX6 404 aa24.24■■□□□ 1.47
CLN3-225ENST00000566824 ZBTB12Q9Y330 459 aaPredicted RBP24.24■■□□□ 1.47
CLN3-225ENST00000566824 ADORA1P30542 326 aa24.23■■□□□ 1.47
CLN3-225ENST00000566824 L3MBTL3Q96JM7 780 aaPredicted RBP24.23■■□□□ 1.47
CLN3-225ENST00000566824 SHTN1A0MZ66 631 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 KIF3CO14782 793 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 GMPSP49915 693 aaPredicted RBP24.22■■□□□ 1.47
CLN3-225ENST00000566824 BCAMP50895 628 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 TIMM10P62072 90 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 PODNQ7Z5L7 613 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 FBXO33Q7Z6M2 555 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 SCN4AP35499 1836 aa24.22■■□□□ 1.47
CLN3-225ENST00000566824 SCNN1DP51172 638 aa24.21■■□□□ 1.47
CLN3-225ENST00000566824 ZNF804AQ7Z570 1209 aa24.21■■□□□ 1.47
CLN3-225ENST00000566824 LPIN2Q92539 896 aa24.21■■□□□ 1.47
CLN3-225ENST00000566824 IQSEC3Q9UPP2 1182 aaPredicted RBP24.21■■□□□ 1.47
CLN3-225ENST00000566824 JAG2Q9Y219 1238 aa24.21■■□□□ 1.47
CLN3-225ENST00000566824 VIL1P09327 827 aaKnown RBP24.2■■□□□ 1.46
CLN3-225ENST00000566824 SLC5A1P13866 664 aa24.2■■□□□ 1.46
CLN3-225ENST00000566824 IL1R1P14778 569 aa24.2■■□□□ 1.46
CLN3-225ENST00000566824 HIBADHP31937 336 aaKnown RBP24.2■■□□□ 1.46
CLN3-225ENST00000566824 OS9Q13438 667 aaPredicted RBP24.2■■□□□ 1.46
CLN3-225ENST00000566824 TNIP1Q15025 636 aa24.2■■□□□ 1.46
CLN3-225ENST00000566824 ZNF609O15014 1411 aa24.19■■□□□ 1.46
CLN3-225ENST00000566824 IFIT1P09914 478 aaKnown RBP24.19■■□□□ 1.46
CLN3-225ENST00000566824 A0A1B0GUL7 405 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 USP17L3A6NCW0 530 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 USP17L4A6NCW7 530 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 APBB1O00213 710 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 EPS15P42566 896 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 GTF2IP78347 998 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 DACT2Q5SW24 774 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 USP17L1Q7RTZ2 530 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 TDRD7Q8NHU6 1098 aaKnown RBP24.18■■□□□ 1.46
CLN3-225ENST00000566824 FBXW7Q969H0 707 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 MYH13Q9UKX3 1938 aa24.18■■□□□ 1.46
CLN3-225ENST00000566824 HMMRO75330 724 aa24.17■■□□□ 1.46
CLN3-225ENST00000566824 VEGFAP15692 232 aaPredicted RBP24.16■■□□□ 1.46
CLN3-225ENST00000566824 PHKA1P46020 1223 aa24.16■■□□□ 1.46
CLN3-225ENST00000566824 RSBN1LQ6PCB5 846 aaPredicted RBP24.16■■□□□ 1.46
CLN3-225ENST00000566824 GMLQ99445 158 aa24.16■■□□□ 1.46
CLN3-225ENST00000566824 GPRC5DQ9NZD1 345 aa24.16■■□□□ 1.46
CLN3-225ENST00000566824 COL1A1P02452 1464 aaPredicted RBP24.16■■□□□ 1.46
CLN3-225ENST00000566824 POTEIP0CG38 1075 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 POTEJP0CG39 1038 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 TNNI3KQ59H18 835 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 TTLL5Q6EMB2 1281 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 CERS5Q8N5B7 392 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 XAGE2Q96GT9 111 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 NEUROD6Q96NK8 337 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 TAF1DQ9H5J8 278 aaPredicted RBP24.15■■□□□ 1.46
CLN3-225ENST00000566824 FPGT-TNNI3KV9GXZ4 949 aa24.15■■□□□ 1.46
CLN3-225ENST00000566824 CAVIN4Q5BKX8 364 aa24.14■■□□□ 1.46
CLN3-225ENST00000566824 STRIP1Q5VSL9 837 aa24.14■■□□□ 1.46
CLN3-225ENST00000566824 HACL1Q9UJ83 578 aa24.14■■□□□ 1.46
CLN3-225ENST00000566824 AKAP2Q9Y2D5 859 aa24.14■■□□□ 1.46
CLN3-225ENST00000566824 VPS37DQ86XT2 251 aa24.13■■□□□ 1.45
CLN3-225ENST00000566824 RHPN1Q8TCX5 695 aa24.13■■□□□ 1.45
CLN3-225ENST00000566824 EAF2Q96CJ1 260 aaPredicted RBP24.13■■□□□ 1.45
CLN3-225ENST00000566824 IL1RAPL2Q9NP60 686 aa24.13■■□□□ 1.45
CLN3-225ENST00000566824 GPR108Q9NPR9 543 aa24.13■■□□□ 1.45
CLN3-225ENST00000566824 TLR7Q9NYK1 1049 aaKnown RBP24.13■■□□□ 1.45
CLN3-225ENST00000566824 CNOT7Q9UIV1 285 aaKnown RBP24.13■■□□□ 1.45
CLN3-225ENST00000566824 EGFRP00533 1210 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 EPHX2P34913 555 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 CCDC102BQ68D86 513 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 MICALL2Q8IY33 904 aa24.12■■□□□ 1.45
CLN3-225ENST00000566824 DBNDD2Q9BQY9 259 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms