RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 USP17L4A6NCW7 530 aa23.18■■□□□ 1.3
CLN3-221ENST00000566057 RBM26Q5T8P6 1007 aaKnown RBP23.18■■□□□ 1.3
CLN3-221ENST00000566057 LDHAL6AQ6ZMR3 332 aa23.18■■□□□ 1.3
CLN3-221ENST00000566057 USP17L1Q7RTZ2 530 aa23.18■■□□□ 1.3
CLN3-221ENST00000566057 ANKRD44Q8N8A2 993 aa23.18■■□□□ 1.3
CLN3-221ENST00000566057 ZC3H15Q8WU90 426 aaKnown RBP23.18■■□□□ 1.3
CLN3-221ENST00000566057 IRS2Q9Y4H2 1338 aa23.17■■□□□ 1.3
CLN3-221ENST00000566057 KCNJ4P48050 445 aa23.17■■□□□ 1.3
CLN3-221ENST00000566057 TAF7LQ5H9L4 462 aa23.17■■□□□ 1.3
CLN3-221ENST00000566057 GMLQ99445 158 aa23.17■■□□□ 1.3
CLN3-221ENST00000566057 GLIS2Q9BZE0 524 aaPredicted RBP23.17■■□□□ 1.3
CLN3-221ENST00000566057 COA1Q9GZY4 146 aa23.17■■□□□ 1.3
CLN3-221ENST00000566057 ZNF609O15014 1411 aa23.16■■□□□ 1.3
CLN3-221ENST00000566057 HNRNPUQ00839 825 aaKnown RBP eCLIP23.16■■□□□ 1.3
CLN3-221ENST00000566057 RABL6Q3YEC7 729 aaPredicted RBP23.16■■□□□ 1.3
CLN3-221ENST00000566057 CST9Q5W186 159 aa23.16■■□□□ 1.3
CLN3-221ENST00000566057 AGBL3Q8NEM8 1001 aa23.16■■□□□ 1.3
CLN3-221ENST00000566057 MXD3Q9BW11 206 aa23.16■■□□□ 1.3
CLN3-221ENST00000566057 PUS3Q9BZE2 481 aaKnown RBP23.16■■□□□ 1.3
CLN3-221ENST00000566057 CNNM1Q9NRU3 951 aa23.16■■□□□ 1.3
CLN3-221ENST00000566057 CNTNAP1P78357 1384 aa23.15■■□□□ 1.3
CLN3-221ENST00000566057 PLIN1O60240 522 aa23.15■■□□□ 1.3
CLN3-221ENST00000566057 ZNF280AP59817 542 aaPredicted RBP23.14■■□□□ 1.29
CLN3-221ENST00000566057 DACT2Q5SW24 774 aa23.14■■□□□ 1.29
CLN3-221ENST00000566057 KIF4BQ2VIQ3 1234 aa23.13■■□□□ 1.29
CLN3-221ENST00000566057 DLK2Q6UY11 383 aa23.13■■□□□ 1.29
CLN3-221ENST00000566057 STRIP1Q5VSL9 837 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 C15orf52Q6ZUT6 534 aaKnown RBP23.12■■□□□ 1.29
CLN3-221ENST00000566057 CDC37L1Q7L3B6 337 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 USP48Q86UV5 1035 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 FBXW7Q969H0 707 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 API5Q9BZZ5 524 aaKnown RBP23.12■■□□□ 1.29
CLN3-221ENST00000566057 CD209Q9NNX6 404 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 RIPOR2Q9Y4F9 1068 aa23.12■■□□□ 1.29
CLN3-221ENST00000566057 ASTN2O75129 1339 aaPredicted RBP23.11■■□□□ 1.29
CLN3-221ENST00000566057 USP17L8P0C7I0 530 aa23.11■■□□□ 1.29
CLN3-221ENST00000566057 VEGFBP49765 207 aa23.11■■□□□ 1.29
CLN3-221ENST00000566057 TTLL5Q6EMB2 1281 aa23.11■■□□□ 1.29
CLN3-221ENST00000566057 ABT1Q9ULW3 272 aaKnown RBP23.11■■□□□ 1.29
CLN3-221ENST00000566057 RASSF10A6NK89 507 aa23.1■■□□□ 1.29
CLN3-221ENST00000566057 DEFB115Q30KQ5 88 aa23.1■■□□□ 1.29
CLN3-221ENST00000566057 LRRC24Q50LG9 513 aa23.1■■□□□ 1.29
CLN3-221ENST00000566057 BCAR3O75815 825 aa23.09■■□□□ 1.29
CLN3-221ENST00000566057 CELF2O95319 508 aaKnown RBP23.09■■□□□ 1.29
CLN3-221ENST00000566057 GTF2IP78347 998 aa23.09■■□□□ 1.29
CLN3-221ENST00000566057 KLHDC4Q8TBB5 520 aa23.09■■□□□ 1.29
CLN3-221ENST00000566057 MYOZ2Q9NPC6 264 aa23.09■■□□□ 1.29
CLN3-221ENST00000566057 SCARF1Q14162 830 aa23.08■■□□□ 1.29
CLN3-221ENST00000566057 KRT26Q7Z3Y9 468 aa23.08■■□□□ 1.29
CLN3-221ENST00000566057 ARHGAP45Q92619 1136 aa23.08■■□□□ 1.29
CLN3-221ENST00000566057 KIF16BQ96L93 1317 aa23.08■■□□□ 1.28
CLN3-221ENST00000566057 ADM5C9JUS6 153 aa23.07■■□□□ 1.28
CLN3-221ENST00000566057 IL1R1P14778 569 aa23.07■■□□□ 1.28
CLN3-221ENST00000566057 DCPSQ96C86 337 aaKnown RBP23.07■■□□□ 1.28
CLN3-221ENST00000566057 ZNF408Q9H9D4 720 aa23.07■■□□□ 1.28
CLN3-221ENST00000566057 MROH5Q6ZUA9 1318 aa23.07■■□□□ 1.28
CLN3-221ENST00000566057 UBTFL1P0CB47 393 aaPredicted RBP23.06■■□□□ 1.28
CLN3-221ENST00000566057 RFX5P48382 616 aaPredicted RBP23.06■■□□□ 1.28
CLN3-221ENST00000566057 UBE4AQ14139 1066 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 ZNF804AQ7Z570 1209 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 GGA3Q9NZ52 723 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 TNNQ9UQP3 1299 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 TLL2Q9Y6L7 1015 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 MYO3BQ8WXR4 1341 aa23.06■■□□□ 1.28
CLN3-221ENST00000566057 HSPA1AP0DMV8 641 aaKnown RBP23.04■■□□□ 1.28
CLN3-221ENST00000566057 HSPA1BP0DMV9 641 aaKnown RBP23.04■■□□□ 1.28
CLN3-221ENST00000566057 NBPF9Q3BBW0 867 aa23.04■■□□□ 1.28
CLN3-221ENST00000566057 ANGEL2Q5VTE6 544 aaKnown RBP23.04■■□□□ 1.28
CLN3-221ENST00000566057 INTS3Q68E01 1043 aaKnown RBP23.04■■□□□ 1.28
CLN3-221ENST00000566057 SAPCD2Q86UD0 394 aa23.04■■□□□ 1.28
CLN3-221ENST00000566057 KIAA0825Q8IV33 1275 aa23.04■■□□□ 1.28
CLN3-221ENST00000566057 CERS5Q8N5B7 392 aa23.04■■□□□ 1.28
CLN3-221ENST00000566057 FAM84BQ96KN1 310 aaPredicted RBP23.04■■□□□ 1.28
CLN3-221ENST00000566057 MEIS3Q99687 375 aa23.04■■□□□ 1.28
CLN3-221ENST00000566057 GYG1P46976 350 aa23.03■■□□□ 1.28
CLN3-221ENST00000566057 METTL24Q5JXM2 366 aa23.03■■□□□ 1.28
CLN3-221ENST00000566057 OGFOD1Q8N543 542 aa23.03■■□□□ 1.28
CLN3-221ENST00000566057 VGLL2Q8N8G2 317 aa23.03■■□□□ 1.28
CLN3-221ENST00000566057 FRAT1Q92837 279 aaPredicted RBP23.03■■□□□ 1.28
CLN3-221ENST00000566057 JAG2Q9Y219 1238 aa23.03■■□□□ 1.28
CLN3-221ENST00000566057 LRRFIP2Q9Y608 721 aaKnown RBP23.03■■□□□ 1.28
CLN3-221ENST00000566057 WDR33Q9C0J8 1336 aaKnown RBP23.03■■□□□ 1.28
CLN3-221ENST00000566057 IPO8O15397 1037 aaKnown RBP23.02■■□□□ 1.28
CLN3-221ENST00000566057 TRIM27P14373 513 aa23.02■■□□□ 1.28
CLN3-221ENST00000566057 PTPN12Q05209 780 aaKnown RBP23.02■■□□□ 1.28
CLN3-221ENST00000566057 CYP4F22Q6NT55 531 aa23.02■■□□□ 1.28
CLN3-221ENST00000566057 SULF1Q8IWU6 871 aa23.02■■□□□ 1.28
CLN3-221ENST00000566057 SCAF8Q9UPN6 1271 aaKnown RBP23.02■■□□□ 1.28
CLN3-221ENST00000566057 WNT10BO00744 389 aa23.01■■□□□ 1.27
CLN3-221ENST00000566057 PDE8BO95263 885 aa23.01■■□□□ 1.27
CLN3-221ENST00000566057 HIBADHP31937 336 aaKnown RBP23.01■■□□□ 1.27
CLN3-221ENST00000566057 ATF7IPQ6VMQ6 1270 aa23.01■■□□□ 1.27
CLN3-221ENST00000566057 TDRD7Q8NHU6 1098 aaKnown RBP23.01■■□□□ 1.27
CLN3-221ENST00000566057 CAPNS2Q96L46 248 aa23.01■■□□□ 1.27
CLN3-221ENST00000566057 ZBED9Q6R2W3 1325 aa23.01■■□□□ 1.27
CLN3-221ENST00000566057 EYA2O00167 538 aa23■■□□□ 1.27
CLN3-221ENST00000566057 SASH1O94885 1247 aa23■■□□□ 1.27
CLN3-221ENST00000566057 PAXIP1Q6ZW49 1069 aaPredicted RBP23■■□□□ 1.27
CLN3-221ENST00000566057 GRM1Q13255 1194 aa22.99■■□□□ 1.27
CLN3-221ENST00000566057 ATG9AQ7Z3C6 839 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms