RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 FSD1Q9BTV5 496 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 CDCA7Q9BWT1 371 aaPredicted RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 ZSWIM6Q9HCJ5 1215 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 DBNLQ9UJU6 430 aaKnown RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 LIMCH1Q9UPQ0 1083 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 PTH1RQ03431 593 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 TSGA10IPQ3SY00 556 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 PLA2G12BQ9BX93 195 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 TLR7Q9NYK1 1049 aaKnown RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 HMG20BQ9P0W2 317 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 ZDHHC9Q9Y397 364 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 LRP6O75581 1613 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 AHDC1Q5TGY3 1603 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 COL22A1Q8NFW1 1626 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 PCCAP05165 728 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 NMIQ13287 307 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 HSP90AB3PQ58FF7 597 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 KIF6Q6ZMV9 814 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 ATG9AQ7Z3C6 839 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 JARID2Q92833 1246 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 HAUS7Q99871 368 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 ALDH8A1Q9H2A2 487 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 ZBTB3Q9H5J0 574 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 SH2B1Q9NRF2 756 aaPredicted RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 LMBRD1Q9NUN5 540 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 ZC3H4Q9UPT8 1303 aaKnown RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 TOGARAM1Q9Y4F4 1720 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 CYP46A1Q9Y6A2 500 aa8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 DDX49Q9Y6V7 483 aaKnown RBP8.67□□□□□ -1.02
HERPUD1-209ENST00000564678 JCADQ9P266 1359 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 MED23Q9ULK4 1368 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 EYA2O00167 538 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 PKP1Q13835 747 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 PPP2R2DQ66LE6 453 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 MCTP1Q6DN14 999 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 PRPF40BQ6NWY9 871 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 RUFY3Q7L099 469 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 UBXN4Q92575 508 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 FAM227BQ96M60 508 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 ASAP1Q9ULH1 1129 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 THRAP3Q9Y2W1 955 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 RBM8AQ9Y5S9 174 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 BCL9O00512 1426 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 WDR33Q9C0J8 1336 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 CASTP20810 708 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 KCNJ4P48050 445 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 AK2P54819 239 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 TAGLNQ01995 201 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 ANKRD1Q15327 319 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 TSR1Q2NL82 804 aaKnown RBP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 NAALADL2Q58DX5 795 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 USPL1Q5W0Q7 1092 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 CREB3L3Q68CJ9 461 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 ITGB4P16144 1822 aa8.66□□□□□ -1.02
HERPUD1-209ENST00000564678 MAP3K15Q6ZN16 1313 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 TJP1Q07157 1748 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 GPR37L1O60883 481 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 ATG7O95352 703 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 CSF1RP07333 972 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 KRT32Q14532 448 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 CCDC57Q2TAC2 916 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 DNAJC10Q8IXB1 793 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 KBTBD3Q8NAB2 608 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 ZBTB38Q8NAP3 1195 aaPredicted RBP8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 DBNDD2Q9BQY9 259 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 PDRG1Q9NUG6 133 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 TFIP11Q9UBB9 837 aaKnown RBP8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 CHMP3Q9Y3E7 222 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 PLCH1Q4KWH8 1693 aa8.65□□□□□ -1.02
HERPUD1-209ENST00000564678 CDHR2Q9BYE9 1310 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 A0A0D9SFI3 127 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 ERVV-1B6SEH8 477 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 SLC27A2O14975 620 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 TAF5LO75529 589 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 XRCC6P12956 609 aaKnown RBP eCLIP8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 NCLP19338 710 aaKnown RBP8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 MCMDC2Q4G0Z9 681 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 JAKMIP1Q96N16 626 aaKnown RBP8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 PSMD1Q99460 953 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 CDHR5Q9HBB8 845 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 AKAP2Q9Y2D5 859 aa8.65□□□□□ -1.03
HERPUD1-209ENST00000564678 ROBO1Q9Y6N7 1651 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 MARCH6O60337 910 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 CYP19A1P11511 503 aaPredicted RBP8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 LRRFIP1Q32MZ4 808 aaKnown RBP8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 ADCK5Q3MIX3 580 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 NOL8Q76FK4 1167 aaKnown RBP8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 CEP126Q9P2H0 1117 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 PALLDQ8WX93 1383 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 RPAP1Q9BWH6 1393 aaPredicted RBP8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 SH3TC1Q8TE82 1336 aa8.64□□□□□ -1.03
HERPUD1-209ENST00000564678 MBD3O95983 291 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 IL6STP40189 918 aaPredicted RBP8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 VAC14Q08AM6 782 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 NEUROD6Q96NK8 337 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 GRPEL1Q9HAV7 217 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 HELLSQ9NRZ9 838 aa8.63□□□□□ -1.03
HERPUD1-209ENST00000564678 ATP6V1DQ9Y5K8 247 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms