RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TMPOP42166 694 aaKnown RBP9.52□□□□□ -0.89
VPS4A-203ENST00000564399 TRIM28Q13263 835 aaKnown RBP9.52□□□□□ -0.89
VPS4A-203ENST00000564399 OTOP1Q7RTM1 612 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 ZBTB38Q8NAP3 1195 aaPredicted RBP9.52□□□□□ -0.89
VPS4A-203ENST00000564399 SLC10A4Q96EP9 437 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 MXD3Q9BW11 206 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 HYPKQ9NX55 129 aa9.52□□□□□ -0.89
VPS4A-203ENST00000564399 MANSC4A6NHS7 340 aaPredicted RBP9.51□□□□□ -0.89
VPS4A-203ENST00000564399 CHL1O00533 1208 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 PDE8AO60658 829 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 FXR1P51114 621 aaKnown RBP eCLIP9.51□□□□□ -0.89
VPS4A-203ENST00000564399 INHBEP58166 350 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 GOLGA2Q08379 1002 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 IFNL1Q8IU54 200 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 JARID2Q92833 1246 aaPredicted RBP9.51□□□□□ -0.89
VPS4A-203ENST00000564399 ERO1AQ96HE7 468 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 TMEM106CQ9BVX2 250 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 MYO3BQ8WXR4 1341 aa9.51□□□□□ -0.89
VPS4A-203ENST00000564399 EN2P19622 333 aaPredicted RBP9.5□□□□□ -0.89
VPS4A-203ENST00000564399 DACT2Q5SW24 774 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 LDLRAD1Q5T700 205 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 APOBEC3FQ8IUX4 373 aaKnown RBP9.5□□□□□ -0.89
VPS4A-203ENST00000564399 CD99L2Q8TCZ2 262 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 MYD88Q99836 296 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 EFCC1Q9HA90 598 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 FZD1Q9UP38 647 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 PTPN22Q9Y2R2 807 aa9.5□□□□□ -0.89
VPS4A-203ENST00000564399 RBBP6Q7Z6E9 1792 aaKnown RBP9.5□□□□□ -0.89
VPS4A-203ENST00000564399 SPEF2Q9C093 1822 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 WTIPA6NIX2 430 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-203ENST00000564399 PPP1R12BO60237 982 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-203ENST00000564399 PCCAP05165 728 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-203ENST00000564399 HOXB7P09629 217 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 STRIP1Q5VSL9 837 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 OTUD7BQ6GQQ9 843 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 KIAA0825Q8IV33 1275 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 CDC5LQ99459 802 aaKnown RBP9.49□□□□□ -0.89
VPS4A-203ENST00000564399 COLQQ9Y215 455 aaPredicted RBP9.49□□□□□ -0.89
VPS4A-203ENST00000564399 MED23Q9ULK4 1368 aa9.49□□□□□ -0.89
VPS4A-203ENST00000564399 IGF2BP3O00425 579 aaKnown RBP eCLIP9.48□□□□□ -0.89
VPS4A-203ENST00000564399 ZBTB48P10074 688 aaPredicted RBP9.48□□□□□ -0.89
VPS4A-203ENST00000564399 MMP14P50281 582 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 CCT4P50991 539 aaKnown RBP9.48□□□□□ -0.89
VPS4A-203ENST00000564399 DUSP27Q5VZP5 1158 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 TTLL5Q6EMB2 1281 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 CCDC146Q8IYE0 955 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 CCDC191Q8NCU4 936 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 ARMC5Q96C12 935 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 WNK4Q96J92 1243 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 CLMNQ96JQ2 1002 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 COA1Q9GZY4 146 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 DEFB129Q9H1M3 183 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 PHAXQ9H814 394 aaKnown RBP9.48□□□□□ -0.89
VPS4A-203ENST00000564399 CWC25Q9NXE8 425 aaPredicted RBP9.48□□□□□ -0.89
VPS4A-203ENST00000564399 MYH3P11055 1940 aa9.48□□□□□ -0.89
VPS4A-203ENST00000564399 SP3Q02447 781 aa9.47□□□□□ -0.89
VPS4A-203ENST00000564399 CRHR2Q13324 411 aa9.47□□□□□ -0.89
VPS4A-203ENST00000564399 DLGAP5Q15398 846 aa9.47□□□□□ -0.89
VPS4A-203ENST00000564399 SLC4A8Q2Y0W8 1093 aa9.47□□□□□ -0.89
VPS4A-203ENST00000564399 BSDC1Q9NW68 430 aaPredicted RBP9.47□□□□□ -0.89
VPS4A-203ENST00000564399 MINPP1Q9UNW1 487 aa9.47□□□□□ -0.89
VPS4A-203ENST00000564399 MKI67P46013 3256 aaKnown RBP9.46□□□□□ -0.89
VPS4A-203ENST00000564399 CTSWP56202 376 aa9.46□□□□□ -0.9
VPS4A-203ENST00000564399 GTF2IP78347 998 aa9.46□□□□□ -0.9
VPS4A-203ENST00000564399 ARHGEF6Q15052 776 aa9.46□□□□□ -0.9
VPS4A-203ENST00000564399 NBPF11Q86T75 865 aa9.46□□□□□ -0.9
VPS4A-203ENST00000564399 TXNRD3Q86VQ6 643 aa9.46□□□□□ -0.9
VPS4A-203ENST00000564399 ZNF646O15015 1829 aaPredicted RBP9.46□□□□□ -0.9
VPS4A-203ENST00000564399 ELL2O00472 640 aaPredicted RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 DDX58O95786 925 aaKnown RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 MYCP01106 439 aaPredicted RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 IREB2P48200 963 aaKnown RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 MAP3K11Q16584 847 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 SUPT20HL1Q3ZLR7 823 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 SLC9C1Q4G0N8 1177 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 TTLL11Q8NHH1 800 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 ZBED3Q96IU2 234 aaPredicted RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 ZNF333Q96JL9 665 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 METTL22Q9BUU2 404 aaPredicted RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 GREM2Q9H772 168 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 TRIM35Q9UPQ4 493 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 LEMD3Q9Y2U8 911 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 COL1A1P02452 1464 aaPredicted RBP9.45□□□□□ -0.9
VPS4A-203ENST00000564399 ECM29Q5VYK3 1845 aa9.45□□□□□ -0.9
VPS4A-203ENST00000564399 CUL9Q8IWT3 2517 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 CLRN2A0PK11 232 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 UNCXA6NJT0 531 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 H0YGN5 161 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 MYO1BO43795 1136 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 IGHMBP2P38935 993 aaKnown RBP9.44□□□□□ -0.9
VPS4A-203ENST00000564399 KCNJ4P48050 445 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 VEZTQ9HBM0 779 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 MBIPQ9NS73 344 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 PPP2R3BQ9Y5P8 575 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 PTCH2Q9Y6C5 1203 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 ZNF804BA4D1E1 1349 aa9.44□□□□□ -0.9
VPS4A-203ENST00000564399 HTTP42858 3142 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 LAMB1P07942 1786 aa9.43□□□□□ -0.9
VPS4A-203ENST00000564399 F8W031 263 aaPredicted RBP9.43□□□□□ -0.9
VPS4A-203ENST00000564399 KLRK1P26718 216 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 372.8 ms