RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CARD10Q9BWT7 1032 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 VRTNQ9H8Y1 702 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 SRA1Q9HD15 236 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 TLR7Q9NYK1 1049 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 KLK14Q9P0G3 267 aa2.91□□□□□ -1.94
USP3-209ENST00000558925 MKRN1Q9UHC7 482 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 ANGEL1Q9UNK9 670 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 NOVA2Q9UNW9 492 aaKnown RBP2.91□□□□□ -1.94
USP3-209ENST00000558925 LGR5O75473 907 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 FOSL1P15407 271 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 JUNBP17275 347 aaPredicted RBP2.9□□□□□ -1.95
USP3-209ENST00000558925 CD68P34810 354 aaPredicted RBP2.9□□□□□ -1.95
USP3-209ENST00000558925 MFAP1P55081 439 aaKnown RBP2.9□□□□□ -1.95
USP3-209ENST00000558925 PTK7Q13308 1070 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 PHLDB3Q6NSJ2 640 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 WFDC3Q8IUB2 231 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 MAP4K3Q8IVH8 894 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 TP53INP2Q8IXH6 220 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 NFATC2IPQ8NCF5 419 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 ZNF428Q96B54 188 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 ZNF594Q96JF6 807 aaPredicted RBP2.9□□□□□ -1.95
USP3-209ENST00000558925 CEP41Q9BYV8 373 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 KCNF1Q9H3M0 494 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 PAK6Q9NQU5 681 aaPredicted RBP2.9□□□□□ -1.95
USP3-209ENST00000558925 MTMR7Q9Y216 660 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 PPME1Q9Y570 386 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 NCANO14594 1321 aa2.9□□□□□ -1.95
USP3-209ENST00000558925 ATAD2Q6PL18 1390 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 FAM196BA6NMK8 535 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 OPLAHO14841 1288 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 MMP20O60882 483 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 RASA1P20936 1047 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 CDC25BP30305 580 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 BUD31P41223 144 aaPredicted RBP2.89□□□□□ -1.95
USP3-209ENST00000558925 KCNA1Q09470 495 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 FAM69CQ0P6D2 419 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 DPYDQ12882 1025 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 ELOAQ14241 798 aaKnown RBP2.89□□□□□ -1.95
USP3-209ENST00000558925 RTN1Q16799 776 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 COL13A1Q5TAT6 717 aaPredicted RBP2.89□□□□□ -1.95
USP3-209ENST00000558925 VSIG10LQ86VR7 867 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 STAG2Q8N3U4 1231 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 OGFOD1Q8N543 542 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 RGS22Q8NE09 1264 aa2.89□□□□□ -1.95
USP3-209ENST00000558925 CHMP7Q8WUX9 453 aaPredicted RBP2.89□□□□□ -1.95
USP3-209ENST00000558925 M0R2N6 131 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 PRRG2O14669 202 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 HOXD8P13378 290 aaPredicted RBP2.88□□□□□ -1.95
USP3-209ENST00000558925 ATP11AP98196 1134 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 HIF1AQ16665 826 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 SGO2Q562F6 1265 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 ANKMY2Q8IV38 441 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 FBXL6Q8N531 539 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 SCG3Q8WXD2 468 aaKnown RBP2.88□□□□□ -1.95
USP3-209ENST00000558925 FBXL18Q96ME1 805 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 LACRTQ9GZZ8 138 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 LEMD3Q9Y2U8 911 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 CHMP3Q9Y3E7 222 aa2.88□□□□□ -1.95
USP3-209ENST00000558925 LZTS3O60299 673 aaPredicted RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 PRMT3O60678 531 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 MICAL2O94851 1124 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 EGFRP00533 1210 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 EPB42P16452 691 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 EPHA1P21709 976 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 MAP4P27816 1152 aaKnown RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 ADMP35318 185 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 RANGAP1P46060 587 aaPredicted RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 SERPINB4P48594 390 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 ARSDP51689 593 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 PDE4CQ08493 712 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 DGKZQ13574 1117 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 DUOXA2Q1HG44 320 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 LARP1Q6PKG0 1096 aaKnown RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 LCNL1Q6ZST4 164 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 SND1Q7KZF4 910 aaKnown RBP eCLIP2.87□□□□□ -1.95
USP3-209ENST00000558925 C1QL4Q86Z23 238 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 FAM200AQ8TCP9 573 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 CLP1Q92989 425 aaKnown RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 KLHDC7BQ96G42 594 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 QTRT2Q9H974 415 aaKnown RBP2.87□□□□□ -1.95
USP3-209ENST00000558925 KCNMB2Q9Y691 235 aa2.87□□□□□ -1.95
USP3-209ENST00000558925 FSCN2O14926 492 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 XYLBO75191 536 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 GHRHP01286 108 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 ATP2B4P23634 1241 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 SSFA2P28290 1259 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 LILRA6Q6PI73 481 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 ZNF574Q6ZN55 896 aaPredicted RBP2.86□□□□□ -1.95
USP3-209ENST00000558925 TXNDC2Q86VQ3 553 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 SIX5Q8N196 739 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 FLCNQ8NFG4 579 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 DCAF11Q8TEB1 546 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 PRIMPOLQ96LW4 560 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 C11orf16Q9NQ32 467 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 SH2B1Q9NRF2 756 aaPredicted RBP2.86□□□□□ -1.95
USP3-209ENST00000558925 JAG2Q9Y219 1238 aa2.86□□□□□ -1.95
USP3-209ENST00000558925 RTCBQ9Y3I0 505 aaKnown RBP2.86□□□□□ -1.95
USP3-209ENST00000558925 B8ZZF3 427 aa2.85□□□□□ -1.95
USP3-209ENST00000558925 FARP2O94887 1054 aaPredicted RBP2.85□□□□□ -1.95
USP3-209ENST00000558925 PSAPP07602 524 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms