RNA–Protein interactions for RNA: ENST00000558880.1

TRAF3-206, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 374 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-206ENST00000558880 DBF4Q9UBU7 674 aaPredicted RBP9.29□□□□□ -0.92
TRAF3-206ENST00000558880 PCDHGC3Q9UN70 934 aa9.29□□□□□ -0.92
TRAF3-206ENST00000558880 LAMB4A4D0S4 1761 aa9.29□□□□□ -0.92
TRAF3-206ENST00000558880 TAF1LQ8IZX4 1826 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 QSER1Q2KHR3 1735 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 CAMTA2O94983 1202 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 RLBP1P12271 317 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 MYL6BP14649 208 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 FLIIQ13045 1269 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 HLFQ16534 295 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 Q3C1V9 767 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 C20orf194Q5TEA3 1177 aa9.28□□□□□ -0.92
TRAF3-206ENST00000558880 COL23A1Q86Y22 540 aaPredicted RBP9.28□□□□□ -0.92
TRAF3-206ENST00000558880 NOB1Q9ULX3 412 aaKnown RBP9.28□□□□□ -0.92
TRAF3-206ENST00000558880 F6X3S4 739 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 PLIN1O60240 522 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 TRIM27P14373 513 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 SMC4Q9NTJ3 1288 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 HYPKQ9NX55 129 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 SRP68Q9UHB9 627 aaKnown RBP9.27□□□□□ -0.93
TRAF3-206ENST00000558880 TBC1D2BQ9UPU7 963 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 WDR90Q96KV7 1748 aa9.27□□□□□ -0.93
TRAF3-206ENST00000558880 COL15A1P39059 1388 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 C6orf229H3BNL8 230 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 IGKV5-2P06315 115 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 SSFA2P28290 1259 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 PRKD2Q9BZL6 878 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 FAM117AQ9C073 453 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 ABCC4O15439 1325 aa9.26□□□□□ -0.93
TRAF3-206ENST00000558880 USP42Q9H9J4 1324 aaKnown RBP9.26□□□□□ -0.93
TRAF3-206ENST00000558880 PI4KAP2A4QPH2 592 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 GYS1P13807 737 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 AIMP1Q12904 312 aaKnown RBP9.25□□□□□ -0.93
TRAF3-206ENST00000558880 CSPP1Q1MSJ5 1256 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 BEND3Q5T5X7 828 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 PI4KAP1Q8N8J0 262 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 ARHGAP45Q92619 1136 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 KLRG1Q96E93 195 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 USB1Q9BQ65 265 aaKnown RBP9.25□□□□□ -0.93
TRAF3-206ENST00000558880 ISCA1Q9BUE6 129 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 NARFQ9UHQ1 456 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 RTCBQ9Y3I0 505 aaKnown RBP9.25□□□□□ -0.93
TRAF3-206ENST00000558880 UBR3Q6ZT12 1888 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 MAP3K15Q6ZN16 1313 aa9.25□□□□□ -0.93
TRAF3-206ENST00000558880 TOMM70O94826 608 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 RRP1P56182 461 aaKnown RBP9.24□□□□□ -0.93
TRAF3-206ENST00000558880 MYSM1Q5VVJ2 828 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 USPL1Q5W0Q7 1092 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 RSBN1LQ6PCB5 846 aaPredicted RBP9.24□□□□□ -0.93
TRAF3-206ENST00000558880 KSR2Q6VAB6 950 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 ATF7IPQ6VMQ6 1270 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 DZIP3Q86Y13 1208 aaKnown RBP9.24□□□□□ -0.93
TRAF3-206ENST00000558880 PLBD2Q8NHP8 589 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 SUPT16HQ9Y5B9 1047 aaKnown RBP9.24□□□□□ -0.93
TRAF3-206ENST00000558880 PCDHB15Q9Y5E8 787 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 PTPRCP08575 1304 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 UBN2Q6ZU65 1347 aa9.24□□□□□ -0.93
TRAF3-206ENST00000558880 ERVV-1B6SEH8 477 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 TM4SF1P30408 202 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 DIXDC1Q155Q3 683 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 PLA2G2CQ5R387 149 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 TRAPPC3LQ5T215 181 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 RIC3Q7Z5B4 369 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 ZNF34Q8IZ26 560 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 JMYQ8N9B5 988 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 METTL22Q9BUU2 404 aaPredicted RBP9.23□□□□□ -0.93
TRAF3-206ENST00000558880 STK31Q9BXU1 1019 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 ZBTB3Q9H5J0 574 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 MAP3K2Q9Y2U5 619 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 FCF1Q9Y324 198 aaKnown RBP9.23□□□□□ -0.93
TRAF3-206ENST00000558880 CD2APQ9Y5K6 639 aa9.23□□□□□ -0.93
TRAF3-206ENST00000558880 RGS20O76081 388 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 CASP7P55210 303 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 DDR1Q08345 913 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 TRIM28Q13263 835 aaKnown RBP9.22□□□□□ -0.93
TRAF3-206ENST00000558880 FKBP5Q13451 457 aaPredicted RBP9.22□□□□□ -0.93
TRAF3-206ENST00000558880 TCIRG1Q13488 830 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 MSS51Q4VC12 460 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 ZKSCAN2Q63HK3 967 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 TBC1D9BQ66K14 1250 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 INTS3Q68E01 1043 aaKnown RBP9.22□□□□□ -0.93
TRAF3-206ENST00000558880 TMEM57Q8N5G2 664 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 ANKLE1Q8NAG6 615 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 PANK1Q8TE04 598 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 DNAAF4Q8WXU2 420 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 NMRK2Q9NPI5 230 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 POLR3EQ9NVU0 708 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 LIMD1Q9UGP4 676 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 KIF16BQ96L93 1317 aa9.22□□□□□ -0.93
TRAF3-206ENST00000558880 IBTKQ9P2D0 1353 aaPredicted RBP9.22□□□□□ -0.93
TRAF3-206ENST00000558880 ATP5J2-PTCD1G3V325 749 aa9.21□□□□□ -0.94
TRAF3-206ENST00000558880 SPTLC1O15269 473 aa9.21□□□□□ -0.94
TRAF3-206ENST00000558880 NFIXQ14938 502 aa9.21□□□□□ -0.94
TRAF3-206ENST00000558880 CWF19L2Q2TBE0 894 aaKnown RBP9.21□□□□□ -0.94
TRAF3-206ENST00000558880 C16orf71Q8IYS4 520 aaPredicted RBP9.21□□□□□ -0.94
TRAF3-206ENST00000558880 SYNE4Q8N205 404 aa9.21□□□□□ -0.94
TRAF3-206ENST00000558880 FRAT1Q92837 279 aaPredicted RBP9.21□□□□□ -0.94
TRAF3-206ENST00000558880 EMID1Q96A84 441 aaPredicted RBP9.21□□□□□ -0.94
TRAF3-206ENST00000558880 CLUAP1Q96AJ1 413 aa9.21□□□□□ -0.94
TRAF3-206ENST00000558880 KAZALD1Q96I82 304 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms