RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 DNMT1P26358 1616 aaKnown RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 SASH3O75995 380 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 EGFRP00533 1210 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 FGFR3P22607 806 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 RBM25P49756 843 aaKnown RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 PLCB3Q01970 1234 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 LAMC2Q13753 1193 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 COL19A1Q14993 1142 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 EAPPQ56P03 285 aaPredicted RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 SV2AQ7L0J3 742 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 RAB44Q7Z6P3 723 aaPredicted RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 NANOS1Q8WY41 292 aaKnown RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 SETDB2Q96T68 719 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 SLC30A3Q99726 388 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 NXF1Q9UBU9 619 aaKnown RBP9.06□□□□□ -0.96
LRRC28-209ENST00000558861 DIP2CQ9Y2E4 1556 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 MAST1Q9Y2H9 1570 aa9.06□□□□□ -0.96
LRRC28-209ENST00000558861 ATP7AQ04656 1500 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 ABCA6Q8N139 1617 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 REREQ9P2R6 1566 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 RBM47A0AV96 593 aaKnown RBP9.05□□□□□ -0.96
LRRC28-209ENST00000558861 TNFRSF21O75509 655 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 ZNF16P17020 682 aaPredicted RBP9.05□□□□□ -0.96
LRRC28-209ENST00000558861 SPEM2Q0P670 501 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 CCINQ13939 588 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 XKR5Q6UX68 686 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 TRERF1Q96PN7 1200 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 GSX2Q9BZM3 304 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 SIGLEC1Q9BZZ2 1709 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 C9orf84Q5VXU9 1444 aa9.05□□□□□ -0.96
LRRC28-209ENST00000558861 SPAG9O60271 1321 aaKnown RBP9.05□□□□□ -0.96
LRRC28-209ENST00000558861 PLXNC1O60486 1568 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 ATP10AO60312 1499 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 ADGRL2O95490 1459 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 PNMA6FA0A0J9YX94 578 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 TARSP26639 723 aaKnown RBP9.04□□□□□ -0.96
LRRC28-209ENST00000558861 CTBSQ01459 385 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 ZNF787Q6DD87 383 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 FOXR1Q6PIV2 292 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 NPM2Q86SE8 214 aaKnown RBP9.04□□□□□ -0.96
LRRC28-209ENST00000558861 NLRP13Q86W25 1043 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 SNX29Q8TEQ0 813 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 CFHR5Q9BXR6 569 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 WWC3Q9ULE0 1092 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 PHF24Q9UPV7 400 aa9.04□□□□□ -0.96
LRRC28-209ENST00000558861 H3BM21 787 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 EIF1AYO14602 144 aaKnown RBP9.03□□□□□ -0.96
LRRC28-209ENST00000558861 NFKB1P19838 968 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 ENOX2Q16206 610 aaKnown RBP9.03□□□□□ -0.96
LRRC28-209ENST00000558861 CSRNP1Q96S65 589 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 C11orf16Q9NQ32 467 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 ZFATQ9P243 1243 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 NCOA1Q15788 1441 aa9.03□□□□□ -0.96
LRRC28-209ENST00000558861 AGLP35573 1532 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 CROCC2H7BZ55 1655 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 UNCXA6NJT0 531 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 PHACTR2O75167 634 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 LDHBP07195 334 aaKnown RBP9.02□□□□□ -0.97
LRRC28-209ENST00000558861 RARAP10276 462 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 GAS6Q14393 721 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 USPL1Q5W0Q7 1092 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 BHMTQ93088 406 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 CHRDQ9H2X0 955 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 ABI2Q9NYB9 513 aaPredicted RBP9.02□□□□□ -0.97
LRRC28-209ENST00000558861 CNTN3Q9P232 1028 aa9.02□□□□□ -0.97
LRRC28-209ENST00000558861 MMP20O60882 483 aa9.01□□□□□ -0.97
LRRC28-209ENST00000558861 FAM50AQ14320 339 aaKnown RBP9.01□□□□□ -0.97
LRRC28-209ENST00000558861 FAM182BQ5T319 152 aa9.01□□□□□ -0.97
LRRC28-209ENST00000558861 GPR161Q8N6U8 529 aaKnown RBP9.01□□□□□ -0.97
LRRC28-209ENST00000558861 C1orf127Q8N9H9 656 aa9.01□□□□□ -0.97
LRRC28-209ENST00000558861 PNMA5Q96PV4 448 aa9.01□□□□□ -0.97
LRRC28-209ENST00000558861 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.01□□□□□ -0.97
LRRC28-209ENST00000558861 A2MP01023 1474 aa9.01□□□□□ -0.97
LRRC28-209ENST00000558861 ROCK1Q13464 1354 aa9□□□□□ -0.97
LRRC28-209ENST00000558861 DHX29Q7Z478 1369 aaKnown RBP9□□□□□ -0.97
LRRC28-209ENST00000558861 C2CD2LO14523 706 aa9□□□□□ -0.97
LRRC28-209ENST00000558861 CPNE3O75131 537 aaKnown RBP9□□□□□ -0.97
LRRC28-209ENST00000558861 CYP2E1P05181 493 aaPredicted RBP9□□□□□ -0.97
LRRC28-209ENST00000558861 RNF19AQ9NV58 838 aa9□□□□□ -0.97
LRRC28-209ENST00000558861 EREGO14944 169 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 POLR3DP05423 398 aaPredicted RBP8.99□□□□□ -0.97
LRRC28-209ENST00000558861 NEFLP07196 543 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 TSPY4P0CV99 314 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 TSPY10P0CW01 314 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 ATP2B2Q01814 1243 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 ZNF326Q5BKZ1 582 aaKnown RBP8.99□□□□□ -0.97
LRRC28-209ENST00000558861 NPAS3Q8IXF0 933 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 ZFYVE28Q9HCC9 887 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 KANSL3Q9P2N6 904 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.99□□□□□ -0.97
LRRC28-209ENST00000558861 KIF15Q9NS87 1388 aa8.99□□□□□ -0.97
LRRC28-209ENST00000558861 ADGBQ8N7X0 1667 aa8.98□□□□□ -0.97
LRRC28-209ENST00000558861 PRPF40AO75400 957 aaKnown RBP8.98□□□□□ -0.97
LRRC28-209ENST00000558861 BMP4P12644 408 aa8.98□□□□□ -0.97
LRRC28-209ENST00000558861 MX2P20592 715 aa8.98□□□□□ -0.97
LRRC28-209ENST00000558861 TTC39BQ5VTQ0 682 aaPredicted RBP8.98□□□□□ -0.97
LRRC28-209ENST00000558861 DUSP9Q99956 384 aaKnown RBP8.98□□□□□ -0.97
LRRC28-209ENST00000558861 DNAJC25Q9H1X3 360 aa8.98□□□□□ -0.97
LRRC28-209ENST00000558861 PRR12Q9ULL5 1215 aa8.98□□□□□ -0.97
LRRC28-209ENST00000558861 ERBB4Q15303 1308 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms