RNA–Protein interactions for RNA: ENST00000558790.5

SPG11-212, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 858 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-212ENST00000558790 WDR33Q9C0J8 1336 aaKnown RBP12.94□□□□□ -0.34
SPG11-212ENST00000558790 NPHP1O15259 732 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 SPTLC1O15269 473 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 SRGNP10124 158 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 ST5P78524 1137 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 STYK1Q6J9G0 422 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 DZIP3Q86Y13 1208 aaKnown RBP12.94□□□□□ -0.34
SPG11-212ENST00000558790 PHACTR3Q96KR7 559 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 SETDB2Q96T68 719 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 PCDHB15Q9Y5E8 787 aa12.94□□□□□ -0.34
SPG11-212ENST00000558790 PRAMEF22A3QJZ6 481 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 RASSF10A6NK89 507 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 BTBD11A6QL63 1104 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 DDNO94850 711 aaPredicted RBP12.93□□□□□ -0.34
SPG11-212ENST00000558790 FDX1P10109 184 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 PRKAR2BP31323 418 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 CNKSR1Q969H4 720 aa12.93□□□□□ -0.34
SPG11-212ENST00000558790 NPM2Q86SE8 214 aaKnown RBP12.92□□□□□ -0.34
SPG11-212ENST00000558790 MASTLQ96GX5 879 aa12.92□□□□□ -0.34
SPG11-212ENST00000558790 TRPM7Q96QT4 1865 aa12.92□□□□□ -0.34
SPG11-212ENST00000558790 PCDHGC3Q9UN70 934 aa12.92□□□□□ -0.34
SPG11-212ENST00000558790 MAP2K1Q02750 393 aaPredicted RBP12.91□□□□□ -0.34
SPG11-212ENST00000558790 DEFB115Q30KQ5 88 aa12.91□□□□□ -0.34
SPG11-212ENST00000558790 SOGA3Q5TF21 947 aa12.91□□□□□ -0.34
SPG11-212ENST00000558790 NBPF5PQ86XG9 351 aaPredicted RBP12.91□□□□□ -0.34
SPG11-212ENST00000558790 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.91□□□□□ -0.34
SPG11-212ENST00000558790 PRR14Q9BWN1 585 aa12.91□□□□□ -0.34
SPG11-212ENST00000558790 USP16Q9Y5T5 823 aa12.91□□□□□ -0.34
SPG11-212ENST00000558790 COL4A5P29400 1685 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 LAMB2P55268 1798 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 ANKRD36CQ5JPF3 1778 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 SOX10P56693 466 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 GRIPAP1Q4V328 841 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 RNF166Q96A37 237 aaPredicted RBP12.9□□□□□ -0.34
SPG11-212ENST00000558790 PCDHB3Q9Y5E6 796 aa12.9□□□□□ -0.34
SPG11-212ENST00000558790 MKI67P46013 3256 aaKnown RBP12.9□□□□□ -0.34
SPG11-212ENST00000558790 A0A0C4DFX4 3053 aa12.9□□□□□ -0.35
SPG11-212ENST00000558790 ZNF541Q9H0D2 1346 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 SNED1Q8TER0 1413 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 FMR1Q06787 632 aaKnown RBP eCLIP12.89□□□□□ -0.351e-6■■■■□ 21.9
SPG11-212ENST00000558790 QPCTQ16769 361 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 CCDC93Q567U6 631 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 MORN1Q5T089 497 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 BLOC1S3Q6QNY0 202 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 OLFM4Q6UX06 510 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 MCM10Q7L590 875 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 LDHDQ86WU2 507 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 C7orf43Q8WVR3 580 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 ZNF652Q9Y2D9 606 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 SZT2Q5T011 3432 aa12.89□□□□□ -0.35
SPG11-212ENST00000558790 IQCA1LA6NCM1 817 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 NPR1P16066 1061 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 PRPF38BQ5VTL8 546 aaKnown RBP12.88□□□□□ -0.35
SPG11-212ENST00000558790 NBPF10Q6P3W6 841 aaKnown RBP12.88□□□□□ -0.35
SPG11-212ENST00000558790 CLEC4GQ6UXB4 293 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 NBPF15Q8N660 670 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 SLC27A5Q9Y2P5 690 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 ABCC12Q96J65 1359 aa12.88□□□□□ -0.35
SPG11-212ENST00000558790 SNRPA1P09661 255 aaKnown RBP12.87□□□□□ -0.35
SPG11-212ENST00000558790 COPS2P61201 443 aa12.87□□□□□ -0.35
SPG11-212ENST00000558790 FKBP4Q02790 459 aaKnown RBP eCLIP12.87□□□□□ -0.35
SPG11-212ENST00000558790 GRM1Q13255 1194 aa12.87□□□□□ -0.35
SPG11-212ENST00000558790 CFAP53Q96M91 514 aa12.87□□□□□ -0.35
SPG11-212ENST00000558790 TAF1DQ9H5J8 278 aaPredicted RBP12.87□□□□□ -0.35
SPG11-212ENST00000558790 ZNF277Q9NRM2 450 aaPredicted RBP12.87□□□□□ -0.35
SPG11-212ENST00000558790 NIP7Q9Y221 180 aaKnown RBP eCLIP12.87□□□□□ -0.35
SPG11-212ENST00000558790 KLRG2A4D1S0 409 aaPredicted RBP12.86□□□□□ -0.35
SPG11-212ENST00000558790 AOC2O75106 756 aa12.86□□□□□ -0.35
SPG11-212ENST00000558790 DGKZQ13574 1117 aa12.86□□□□□ -0.35
SPG11-212ENST00000558790 DCTN1Q14203 1278 aa12.86□□□□□ -0.35
SPG11-212ENST00000558790 EAPPQ56P03 285 aaPredicted RBP12.86□□□□□ -0.35
SPG11-212ENST00000558790 MAP1SQ66K74 1059 aaPredicted RBP12.86□□□□□ -0.35
SPG11-212ENST00000558790 CYP4F22Q6NT55 531 aa12.86□□□□□ -0.35
SPG11-212ENST00000558790 SYMPKQ92797 1274 aaKnown RBP12.86□□□□□ -0.35
SPG11-212ENST00000558790 FAM177BA6PVY3 158 aa12.85□□□□□ -0.35
SPG11-212ENST00000558790 U2AF1L5P0DN76 240 aaPredicted RBP12.85□□□□□ -0.35
SPG11-212ENST00000558790 GJA5P36382 358 aa12.85□□□□□ -0.35
SPG11-212ENST00000558790 U2AF1Q01081 240 aaKnown RBP eCLIP12.85□□□□□ -0.35
SPG11-212ENST00000558790 RTF1Q92541 710 aaKnown RBP12.85□□□□□ -0.35
SPG11-212ENST00000558790 CAPNS2Q96L46 248 aa12.85□□□□□ -0.35
SPG11-212ENST00000558790 ABT1Q9ULW3 272 aaKnown RBP12.85□□□□□ -0.35
SPG11-212ENST00000558790 RNF123Q5XPI4 1314 aa12.85□□□□□ -0.35
SPG11-212ENST00000558790 TAF1P21675 1872 aa12.85□□□□□ -0.35
SPG11-212ENST00000558790 PPP2R1AP30153 589 aa12.84□□□□□ -0.35
SPG11-212ENST00000558790 HLFQ16534 295 aa12.84□□□□□ -0.35
SPG11-212ENST00000558790 RTL5Q5HYW3 569 aaPredicted RBP12.84□□□□□ -0.35
SPG11-212ENST00000558790 TPTE2Q6XPS3 522 aa12.84□□□□□ -0.35
SPG11-212ENST00000558790 NUDCQ9Y266 331 aa12.84□□□□□ -0.35
SPG11-212ENST00000558790 RIC1Q4ADV7 1423 aa12.83□□□□□ -0.36
SPG11-212ENST00000558790 LILRB3O75022 631 aa12.83□□□□□ -0.36
SPG11-212ENST00000558790 IARSP41252 1262 aaKnown RBP12.83□□□□□ -0.36
SPG11-212ENST00000558790 TUSC1Q2TAM9 212 aa12.83□□□□□ -0.36
SPG11-212ENST00000558790 GPR101Q96P66 508 aaPredicted RBP12.83□□□□□ -0.36
SPG11-212ENST00000558790 HACL1Q9UJ83 578 aa12.83□□□□□ -0.36
SPG11-212ENST00000558790 C6orf229H3BNL8 230 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 EPHX2P34913 555 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 CRY2Q49AN0 593 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 RNF19BQ6ZMZ0 732 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 SLC51AQ86UW1 340 aa12.82□□□□□ -0.36
SPG11-212ENST00000558790 RTKN2Q8IZC4 609 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms