RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 FAM182BQ5T319 152 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 SCUBE3Q8IX30 993 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 TNS4Q8IZW8 715 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 SLC10A4Q96EP9 437 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 FRMD6Q96NE9 622 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 CAPN10Q9HC96 672 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 PLCH1Q4KWH8 1693 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 ARHGEF10O15013 1369 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 THSD7AQ9UPZ6 1657 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 BACH1O14867 736 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 U2SURPO15042 1029 aaKnown RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 CALD1Q05682 793 aaKnown RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 EHHADHQ08426 723 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 LDLRAD1Q5T700 205 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 C9orf131Q5VYM1 1079 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 ALG1LQ6GMV1 187 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 BPHLQ86WA6 291 aaPredicted RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 DNAJC5GQ8N7S2 189 aa6.59□□□□□ -1.35
LDLR-209ENST00000558528 TSEN2Q8NCE0 465 aaKnown RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 DNAJC2Q99543 621 aaKnown RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 DUSP9Q99956 384 aaKnown RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 FHDC1Q9C0D6 1143 aaPredicted RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.59□□□□□ -1.35
LDLR-209ENST00000558528 MAP3K5Q99683 1374 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 APBA3O96018 575 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 GCP02774 474 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 MPSTP25325 297 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 IL13P35225 146 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 MAPK8P45983 427 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 PSEN2P49810 448 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 LMOD3Q0VAK6 560 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 C16orf46Q6P387 395 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 SH3RF1Q7Z6J0 888 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 IP6K1Q92551 441 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 VPS9D1Q9Y2B5 631 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 PCDHB3Q9Y5E6 796 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 PCDHB11Q9Y5F2 797 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 OVOS2A0A0J9YW53 1432 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 OVOS2Q6IE36 1432 aa6.58□□□□□ -1.36
LDLR-209ENST00000558528 RTL1A6NKG5 1358 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 FLT4P35916 1363 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 ESPNB1AK53 854 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 TRIM37O94972 964 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 GTF2F1P35269 517 aaKnown RBP eCLIP6.57□□□□□ -1.36
LDLR-209ENST00000558528 RRS1Q15050 365 aaKnown RBP6.57□□□□□ -1.36
LDLR-209ENST00000558528 MAMSTRQ6ZN01 415 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 WDR63Q8IWG1 891 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 FBF1Q8TES7 1133 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 FAM129BQ96TA1 746 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 UNC93B1Q9H1C4 597 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 SCUBE2Q9NQ36 999 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.57□□□□□ -1.36
LDLR-209ENST00000558528 EMILIN1Q9Y6C2 1016 aa6.57□□□□□ -1.36
LDLR-209ENST00000558528 SMG6Q86US8 1419 aaKnown RBP6.57□□□□□ -1.36
LDLR-209ENST00000558528 ITSN1Q15811 1721 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 NRAPQ86VF7 1730 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 FMN2Q9NZ56 1722 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 MAP3K19Q56UN5 1328 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 SPATA31A3Q5VYP0 1347 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 A0A0G2JS52 829 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 APAF1O14727 1248 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 CLSTN1O94985 981 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 NEFLP07196 543 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 ARID5AQ03989 594 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 RBL2Q08999 1139 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 NAA30Q147X3 362 aaPredicted RBP6.56□□□□□ -1.36
LDLR-209ENST00000558528 FAM196AQ6ZSG2 479 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 ARHGEF25Q86VW2 580 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 VPS37DQ86XT2 251 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 CRELD1Q96HD1 420 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 CYLDQ9NQC7 956 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 ZNF358Q9NW07 568 aa6.56□□□□□ -1.36
LDLR-209ENST00000558528 USP19O94966 1318 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 MAGEB6P1A0A0J9YX57 407 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 GNA15P30679 374 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 HOXC9P31274 260 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 USP5P45974 858 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 PPP4CP60510 307 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 AAMPQ13685 434 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 EIF4A2Q14240 407 aaKnown RBP6.55□□□□□ -1.36
LDLR-209ENST00000558528 CCDC144BQ3MJ40 725 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 ERFEQ4G0M1 354 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 NUTM2GQ5VZR2 741 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 SDE2Q6IQ49 451 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 ZNF654Q8IZM8 581 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 STAG2Q8N3U4 1231 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 TCP11L2Q8N4U5 519 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 MRPL50Q8N5N7 158 aaKnown RBP6.55□□□□□ -1.36
LDLR-209ENST00000558528 DHX38Q92620 1227 aaKnown RBP6.55□□□□□ -1.36
LDLR-209ENST00000558528 SPSB2Q99619 263 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 PDGFDQ9GZP0 370 aaPredicted RBP6.55□□□□□ -1.36
LDLR-209ENST00000558528 MYH16Q9H6N6 1097 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 CWC22Q9HCG8 908 aaKnown RBP6.55□□□□□ -1.36
LDLR-209ENST00000558528 KIF1AQ12756 1690 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 TOPAZ1Q8N9V7 1692 aa6.55□□□□□ -1.36
LDLR-209ENST00000558528 TNS3Q68CZ2 1445 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 ATP10DQ9P241 1426 aa6.54□□□□□ -1.36
LDLR-209ENST00000558528 BHMG1C9JSJ3 638 aaPredicted RBP6.54□□□□□ -1.36
LDLR-209ENST00000558528 HTATSF1O43719 755 aaKnown RBP6.54□□□□□ -1.36
LDLR-209ENST00000558528 TMPOP42166 694 aaKnown RBP6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms