RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 PAG1Q9NWQ8 432 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 TPCN1Q9ULQ1 816 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 NSFL1CQ9UNZ2 370 aaKnown RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 CNPY2Q9Y2B0 182 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 AKAP2Q9Y2D5 859 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 KIF3AQ9Y496 699 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 ANKRD36CQ5JPF3 1778 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 TCHHQ07283 1943 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 ELP1O95163 1332 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 VPS37CA5D8V6 355 aaPredicted RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 HSPA2P54652 639 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 HSP90AB3PQ58FF7 597 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 LARP1BQ659C4 914 aaKnown RBP8.62□□□□□ -1.03
VPS13C-206ENST00000558338 ATG9AQ7Z3C6 839 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 PLA2G12BQ9BX93 195 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 CCDC39Q9UFE4 941 aa8.62□□□□□ -1.03
VPS13C-206ENST00000558338 FIBPO43427 364 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 GADD45BO75293 160 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-206ENST00000558338 STARD3NLO95772 234 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 A1BGP04217 495 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 ST3GAL1Q11201 340 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 TCIRG1Q13488 830 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 CCDC57Q2TAC2 916 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 JARID2Q92833 1246 aaPredicted RBP8.61□□□□□ -1.03
VPS13C-206ENST00000558338 GTF3C6Q969F1 213 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 CHAMP1Q96JM3 812 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 LLPHQ9BRT6 129 aaKnown RBP8.61□□□□□ -1.03
VPS13C-206ENST00000558338 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
VPS13C-206ENST00000558338 CDHR2Q9BYE9 1310 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 ITGB4P16144 1822 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 WNK3Q9BYP7 1800 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 PCCAP05165 728 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 ZFYP08048 801 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 IFIT1P09914 478 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 TOB2Q14106 344 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 FOXD4L6Q3SYB3 417 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 CCDC158Q5M9N0 1113 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 ZMYM1Q5SVZ6 1142 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 FOXD4L3Q6VB84 417 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 DDX46Q7L014 1031 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 DDX54Q8TDD1 881 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 NEUROD6Q96NK8 337 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 LARP6Q9BRS8 491 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 TMEM121BQ9BXQ6 578 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 SCAND2PQ9GZW5 306 aaPredicted RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 GDPD2Q9HCC8 539 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 STRN4Q9NRL3 753 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 CEP126Q9P2H0 1117 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 HMGN5P82970 282 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 DNM1Q05193 864 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 PLCD3Q8N3E9 789 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 NECAB1Q8N987 351 aa8.6□□□□□ -1.03
VPS13C-206ENST00000558338 EDC3Q96F86 508 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 NOL7Q9UMY1 257 aaKnown RBP8.6□□□□□ -1.03
VPS13C-206ENST00000558338 LAMA4Q16363 1823 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 DISP2A7MBM2 1401 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 COL22A1Q8NFW1 1626 aaPredicted RBP8.59□□□□□ -1.03
VPS13C-206ENST00000558338 MYH3P11055 1940 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 A0A1B0GUL7 405 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 GOLIM4O00461 696 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 RNF113AO15541 343 aaKnown RBP8.59□□□□□ -1.03
VPS13C-206ENST00000558338 TAF7LQ5H9L4 462 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 ZBTB38Q8NAP3 1195 aaPredicted RBP8.59□□□□□ -1.03
VPS13C-206ENST00000558338 ZSCAN16Q9H4T2 348 aaPredicted RBP8.59□□□□□ -1.03
VPS13C-206ENST00000558338 CTNNA3Q9UI47 895 aa8.59□□□□□ -1.03
VPS13C-206ENST00000558338 MAP3K15Q6ZN16 1313 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 MYH7P12883 1935 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 CYP21A2P08686 494 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 FGD1P98174 961 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 TTC39AQ5SRH9 613 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 GORABQ5T7V8 394 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.58□□□□□ -1.04
VPS13C-206ENST00000558338 Q6ZUG5 572 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 DHX32Q7L7V1 743 aaKnown RBP8.58□□□□□ -1.04
VPS13C-206ENST00000558338 NAP1L5Q96NT1 182 aaPredicted RBP8.58□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF335Q9H4Z2 1342 aaPredicted RBP8.58□□□□□ -1.04
VPS13C-206ENST00000558338 MYH15Q9Y2K3 1946 aa8.58□□□□□ -1.04
VPS13C-206ENST00000558338 PFKFB2O60825 505 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 IFIT5Q13325 482 aaKnown RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 LRRC24Q50LG9 513 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 CCDC129Q6ZRS4 1044 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 CDC37L1Q7L3B6 337 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 KDM4CQ9H3R0 1056 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 WDR70Q9NW82 654 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 ZKSCAN5Q9Y2L8 839 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 MAST3O60307 1309 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 GOLGA6L4A6NEF3 574 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 H3BQV1 296 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 ZNF500O60304 480 aaPredicted RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 PTMAP06454 111 aaKnown RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 CSF1RP07333 972 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 CCDC192P0DO97 292 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 IFFO2Q5TF58 517 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 ATL3Q6DD88 541 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 NAA16Q6N069 864 aaPredicted RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 ZSCAN25Q6NSZ9 544 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 GIGYF2Q6Y7W6 1299 aaKnown RBP8.57□□□□□ -1.04
VPS13C-206ENST00000558338 FBXL16Q8N461 479 aa8.57□□□□□ -1.04
VPS13C-206ENST00000558338 RNF214Q8ND24 703 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms