RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DDX60Q8IY21 1712 aaKnown RBP15.1■□□□□ 0.01
SHMT2-229ENST00000557348 GTF2E1P29083 439 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 ARID4AP29374 1257 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 HS1BP3Q53T59 392 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 PDCL3Q9H2J4 239 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 SH2B1Q9NRF2 756 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 SBF2Q86WG5 1849 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 PDIA4P13667 645 aaKnown RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 FGFR2P21802 821 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 TPTE2Q6XPS3 522 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 CLEC17AQ6ZS10 378 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 KRT27Q7Z3Y8 459 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 TRIM44Q96DX7 344 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 EDC3Q96F86 508 aaKnown RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 TTC14Q96N46 770 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 ALDH8A1Q9H2A2 487 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-229ENST00000557348 LIMCH1Q9UPQ0 1083 aa15.09■□□□□ 0.01
SHMT2-229ENST00000557348 RPAP1Q9BWH6 1393 aaPredicted RBP15.08■□□□□ 0.01
SHMT2-229ENST00000557348 GOLGA6L22H0YM25 854 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 SLC27A2O14975 620 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 HMGB1P09429 215 aaKnown RBP15.08■□□□□ 0
SHMT2-229ENST00000557348 CASTP20810 708 aaKnown RBP15.08■□□□□ 0
SHMT2-229ENST00000557348 TRAPPC3LQ5T215 181 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 RUFY3Q7L099 469 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 ANKRD18AQ8IVF6 992 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 RASEFQ8IZ41 740 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 JAKMIP1Q96N16 626 aaKnown RBP15.08■□□□□ 0
SHMT2-229ENST00000557348 UPF3BQ9BZI7 483 aaKnown RBP15.08■□□□□ 0
SHMT2-229ENST00000557348 C4BP0C0L5 1744 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 COL24A1Q17RW2 1714 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 ARAP2Q8WZ64 1704 aa15.08■□□□□ 0
SHMT2-229ENST00000557348 FAM177BA6PVY3 158 aa15.07■□□□□ 0
SHMT2-229ENST00000557348 ADORA1P30542 326 aa15.07■□□□□ 0
SHMT2-229ENST00000557348 RFC4P35249 363 aa15.07■□□□□ 0
SHMT2-229ENST00000557348 FKBP4Q02790 459 aaKnown RBP eCLIP15.07■□□□□ 0
SHMT2-229ENST00000557348 ZNF589Q86UQ0 364 aaPredicted RBP15.07■□□□□ 0
SHMT2-229ENST00000557348 NBPF5PQ86XG9 351 aaPredicted RBP15.07■□□□□ 0
SHMT2-229ENST00000557348 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.07■□□□□ 0
SHMT2-229ENST00000557348 BLOC1S2Q6QNY1 142 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 MTERF4Q7Z6M4 381 aaKnown RBP15.06■□□□□ 0
SHMT2-229ENST00000557348 APPBP2Q92624 585 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 NLRP3Q96P20 1036 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 BCL2L12Q9HB09 334 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 PDRG1Q9NUG6 133 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 BSDC1Q9NW68 430 aaPredicted RBP15.06■□□□□ 0
SHMT2-229ENST00000557348 CTNNA3Q9UI47 895 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 CARMIL3Q8ND23 1372 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 TAF1LQ8IZX4 1826 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 CCDC173Q0VFZ6 552 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 ERFEQ4G0M1 354 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 TBC1D9BQ66K14 1250 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 CCDC102BQ68D86 513 aa15.06■□□□□ 0
SHMT2-229ENST00000557348 PTF1AQ7RTS3 328 aa15.05■□□□□ -0
SHMT2-229ENST00000557348 ANP32BQ92688 251 aaKnown RBP15.05■□□□□ -0
SHMT2-229ENST00000557348 ARHGEF1Q92888 912 aaKnown RBP15.05■□□□□ -0
SHMT2-229ENST00000557348 TNPO1Q92973 898 aaKnown RBP15.05■□□□□ -0
SHMT2-229ENST00000557348 ZAP70P43403 619 aa15.04■□□□□ -0
SHMT2-229ENST00000557348 UBE4AQ14139 1066 aa15.04■□□□□ -0
SHMT2-229ENST00000557348 UBE3CQ15386 1083 aa15.04■□□□□ -0
SHMT2-229ENST00000557348 CHMP4CQ96CF2 233 aa15.04■□□□□ -0
SHMT2-229ENST00000557348 SEC31BQ9NQW1 1179 aa15.04■□□□□ -0
SHMT2-229ENST00000557348 GNL3LQ9NVN8 582 aaKnown RBP15.04■□□□□ -0
SHMT2-229ENST00000557348 MCAMP43121 646 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 AK2P54819 239 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 PPP1R9BQ96SB3 815 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 FOXD4L1Q9NU39 408 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 NDUFB9Q9Y6M9 179 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 MAST3O60307 1309 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 ZBTB22O15209 634 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 IGSF3O75054 1194 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 CYP2E1P05181 493 aaPredicted RBP15.03■□□□□ -0
SHMT2-229ENST00000557348 RPS6KB1P23443 525 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 CHRNDQ07001 517 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 FAM182BQ5T319 152 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 TMED8Q6PL24 325 aaPredicted RBP15.03■□□□□ -0
SHMT2-229ENST00000557348 ANKRD2Q9GZV1 360 aa15.03■□□□□ -0
SHMT2-229ENST00000557348 KCNQ4P56696 695 aa15.02□□□□□ -0.01
SHMT2-229ENST00000557348 MAP3K12Q12852 859 aa15.02□□□□□ -0.01
SHMT2-229ENST00000557348 WASHC4Q2M389 1173 aa15.02□□□□□ -0.01
SHMT2-229ENST00000557348 BICDL1Q6ZP65 573 aa15.02□□□□□ -0.01
SHMT2-229ENST00000557348 UPF1Q92900 1129 aaKnown RBP eCLIP15.02□□□□□ -0.01
SHMT2-229ENST00000557348 NEK1Q96PY6 1258 aa15.02□□□□□ -0.01
SHMT2-229ENST00000557348 NPHP1O15259 732 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 PHKA1P46020 1223 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 ADCK5Q3MIX3 580 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-229ENST00000557348 SPATA5Q8NB90 893 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 SRP68Q9UHB9 627 aaKnown RBP15.01□□□□□ -0.01
SHMT2-229ENST00000557348 BRWD3Q6RI45 1802 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 C4AP0C0L4 1744 aa15.01□□□□□ -0.01
SHMT2-229ENST00000557348 SEMA3EO15041 775 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 HSPD1P10809 573 aaKnown RBP15□□□□□ -0.01
SHMT2-229ENST00000557348 ADD2P35612 726 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 SCARF1Q14162 830 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 CAVIN4Q5BKX8 364 aa15□□□□□ -0.01
SHMT2-229ENST00000557348 ZGPATQ8N5A5 531 aaKnown RBP15□□□□□ -0.01
SHMT2-229ENST00000557348 SEC62Q99442 399 aaKnown RBP15□□□□□ -0.01
SHMT2-229ENST00000557348 RPS8P62241 208 aaKnown RBP15□□□□□ -0.01
SHMT2-229ENST00000557348 IMMTQ16891 758 aaKnown RBP15□□□□□ -0.01
SHMT2-229ENST00000557348 CCDC129Q6ZRS4 1044 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms