RNA–Protein interactions for RNA: ENST00000557037.5

PSEN1-220, Transcript of presenilin 1, humanhuman

TSL 4

Gene PSEN1, Length 555 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-220ENST00000557037 RPS8P62241 208 aaKnown RBP16.56■□□□□ 0.24
PSEN1-220ENST00000557037 OTUD7BQ6GQQ9 843 aa16.56■□□□□ 0.24
PSEN1-220ENST00000557037 USP17L1Q7RTZ2 530 aa16.56■□□□□ 0.24
PSEN1-220ENST00000557037 SF3B3Q15393 1217 aaKnown RBP16.55■□□□□ 0.24
PSEN1-220ENST00000557037 RTL5Q5HYW3 569 aaPredicted RBP16.55■□□□□ 0.24
PSEN1-220ENST00000557037 COPS6Q7L5N1 327 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 XAGE3Q8WTP9 111 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 SHISA4Q96DD7 197 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 FAM89AQ96GI7 184 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 PTPN18Q99952 460 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 PODXL2Q9NZ53 605 aa16.55■□□□□ 0.24
PSEN1-220ENST00000557037 PSME4Q14997 1843 aa16.54■□□□□ 0.24
PSEN1-220ENST00000557037 PER1O15534 1290 aaPredicted RBP16.54■□□□□ 0.24
PSEN1-220ENST00000557037 GJA5P36382 358 aa16.54■□□□□ 0.24
PSEN1-220ENST00000557037 FBXW7Q969H0 707 aa16.54■□□□□ 0.24
PSEN1-220ENST00000557037 ZBTB7BO15156 539 aaPredicted RBP16.53■□□□□ 0.24
PSEN1-220ENST00000557037 OGFOD1Q8N543 542 aa16.53■□□□□ 0.24
PSEN1-220ENST00000557037 ARHGEF6Q15052 776 aa16.52■□□□□ 0.24
PSEN1-220ENST00000557037 APOBEC3FQ8IUX4 373 aaKnown RBP16.52■□□□□ 0.24
PSEN1-220ENST00000557037 CFAP53Q96M91 514 aa16.52■□□□□ 0.24
PSEN1-220ENST00000557037 SEC31BQ9NQW1 1179 aa16.52■□□□□ 0.24
PSEN1-220ENST00000557037 NUDCQ9Y266 331 aa16.52■□□□□ 0.24
PSEN1-220ENST00000557037 NR2E3Q9Y5X4 410 aa16.52■□□□□ 0.24
PSEN1-220ENST00000557037 MTFR1Q15390 333 aa16.51■□□□□ 0.23
PSEN1-220ENST00000557037 Q7L0L9 218 aa16.51■□□□□ 0.23
PSEN1-220ENST00000557037 DEFB123Q8N688 67 aa16.51■□□□□ 0.23
PSEN1-220ENST00000557037 HTATIP2Q9BUP3 242 aa16.51■□□□□ 0.23
PSEN1-220ENST00000557037 LAMA3Q16787 3333 aa16.51■□□□□ 0.23
PSEN1-220ENST00000557037 ECM2O94769 699 aaPredicted RBP16.5■□□□□ 0.23
PSEN1-220ENST00000557037 DACT2Q5SW24 774 aa16.5■□□□□ 0.23
PSEN1-220ENST00000557037 PODNQ7Z5L7 613 aa16.5■□□□□ 0.23
PSEN1-220ENST00000557037 ARHGAP39Q9C0H5 1083 aa16.5■□□□□ 0.23
PSEN1-220ENST00000557037 A0A1W2PPC1 479 aa16.49■□□□□ 0.23
PSEN1-220ENST00000557037 ATP5J2-PTCD1G3V325 749 aa16.49■□□□□ 0.23
PSEN1-220ENST00000557037 MAP3K11Q16584 847 aa16.49■□□□□ 0.23
PSEN1-220ENST00000557037 DEFB129Q9H1M3 183 aa16.49■□□□□ 0.23
PSEN1-220ENST00000557037 STAP2Q9UGK3 403 aa16.49■□□□□ 0.23
PSEN1-220ENST00000557037 SSC5DA1L4H1 1573 aa16.48■□□□□ 0.23
PSEN1-220ENST00000557037 ZSWIM8A7E2V4 1837 aa16.48■□□□□ 0.23
PSEN1-220ENST00000557037 IRS4O14654 1257 aaPredicted RBP16.48■□□□□ 0.23
PSEN1-220ENST00000557037 PPP1R12BO60237 982 aaPredicted RBP16.48■□□□□ 0.23
PSEN1-220ENST00000557037 TAF1CQ15572 869 aaPredicted RBP16.48■□□□□ 0.23
PSEN1-220ENST00000557037 STXBP5LQ9Y2K9 1186 aa16.48■□□□□ 0.23
PSEN1-220ENST00000557037 UNC80Q8N2C7 3258 aa16.48■□□□□ 0.23
PSEN1-220ENST00000557037 TESPA1A2RU30 521 aaPredicted RBP16.47■□□□□ 0.23
PSEN1-220ENST00000557037 UBE2Q1Q7Z7E8 422 aa16.47■□□□□ 0.23
PSEN1-220ENST00000557037 ZFYVE28Q9HCC9 887 aa16.47■□□□□ 0.23
PSEN1-220ENST00000557037 TTC28Q96AY4 2481 aa16.47■□□□□ 0.23
PSEN1-220ENST00000557037 KIAA0825Q8IV33 1275 aa16.46■□□□□ 0.23
PSEN1-220ENST00000557037 CCDC85AQ96PX6 553 aaPredicted RBP16.46■□□□□ 0.23
PSEN1-220ENST00000557037 ELP3Q9H9T3 547 aa16.46■□□□□ 0.23
PSEN1-220ENST00000557037 TSPYL4Q9UJ04 414 aa16.46■□□□□ 0.23
PSEN1-220ENST00000557037 LAMB1P07942 1786 aa16.46■□□□□ 0.22
PSEN1-220ENST00000557037 XDHP47989 1333 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 DLG5Q8TDM6 1919 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 ANKRD13DQ6ZTN6 518 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 BRI3BPQ8WY22 251 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 ISCA1Q9BUE6 129 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 TIMELESSQ9UNS1 1208 aa16.45■□□□□ 0.22
PSEN1-220ENST00000557037 ATP2B4P23634 1241 aa16.44■□□□□ 0.22
PSEN1-220ENST00000557037 PHF6Q8IWS0 365 aaKnown RBP eCLIP16.44■□□□□ 0.22
PSEN1-220ENST00000557037 NKX2-3Q8TAU0 364 aa16.44■□□□□ 0.22
PSEN1-220ENST00000557037 OPTNQ96CV9 577 aa16.44■□□□□ 0.22
PSEN1-220ENST00000557037 ZBED3Q96IU2 234 aaPredicted RBP16.44■□□□□ 0.22
PSEN1-220ENST00000557037 MYO3BQ8WXR4 1341 aa16.44■□□□□ 0.22
PSEN1-220ENST00000557037 EVI5O60447 810 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 USP2O75604 605 aaPredicted RBP16.43■□□□□ 0.22
PSEN1-220ENST00000557037 FARP2O94887 1054 aaPredicted RBP16.43■□□□□ 0.22
PSEN1-220ENST00000557037 IREB2P48200 963 aaKnown RBP16.43■□□□□ 0.22
PSEN1-220ENST00000557037 KIF22Q14807 665 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 NBPF12Q5TAG4 269 aaPredicted RBP16.43■□□□□ 0.22
PSEN1-220ENST00000557037 STRIP1Q5VSL9 837 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 CNKSR2Q8WXI2 1034 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 MS4A4AQ96JQ5 239 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 MTMR10Q9NXD2 777 aa16.43■□□□□ 0.22
PSEN1-220ENST00000557037 COL1A1P02452 1464 aaPredicted RBP16.42■□□□□ 0.22
PSEN1-220ENST00000557037 CCL15-CCL14A0A0B4J2E2 113 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 UNCXA6NJT0 531 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 CCL5P13501 91 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 GJA8P48165 433 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 LACTBP83111 547 aaPredicted RBP16.42■□□□□ 0.22
PSEN1-220ENST00000557037 CCL15Q16663 113 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 SUPT20HL1Q3ZLR7 823 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 ANKRD13AQ8IZ07 590 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 FAM43AQ8N2R8 423 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 PCDHAC2Q9Y5I4 1007 aa16.42■□□□□ 0.22
PSEN1-220ENST00000557037 ZNF646O15015 1829 aaPredicted RBP16.42■□□□□ 0.22
PSEN1-220ENST00000557037 CLRN2A0PK11 232 aa16.41■□□□□ 0.22
PSEN1-220ENST00000557037 GJB1P08034 283 aa16.41■□□□□ 0.22
PSEN1-220ENST00000557037 DLGAP5Q15398 846 aa16.41■□□□□ 0.22
PSEN1-220ENST00000557037 RNF208Q9H0X6 261 aa16.41■□□□□ 0.22
PSEN1-220ENST00000557037 PRDM6Q9NQX0 595 aa16.41■□□□□ 0.22
PSEN1-220ENST00000557037 TTLL5Q6EMB2 1281 aa16.4■□□□□ 0.22
PSEN1-220ENST00000557037 GPR153Q6NV75 609 aa16.4■□□□□ 0.22
PSEN1-220ENST00000557037 PLBD2Q8NHP8 589 aa16.4■□□□□ 0.22
PSEN1-220ENST00000557037 VEZTQ9HBM0 779 aa16.4■□□□□ 0.22
PSEN1-220ENST00000557037 MED23Q9ULK4 1368 aa16.39■□□□□ 0.21
PSEN1-220ENST00000557037 NEFMP07197 916 aa16.39■□□□□ 0.21
PSEN1-220ENST00000557037 CCDC152Q4G0S7 254 aa16.39■□□□□ 0.21
PSEN1-220ENST00000557037 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms