RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 LRRC37AA6NMS7 1700 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 DUOX1Q9NRD9 1551 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 LMNB1P20700 586 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 DOK7Q18PE1 504 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 TNNI3KQ59H18 835 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 TXNRD3Q86VQ6 643 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 RNF181Q9P0P0 153 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 FPGT-TNNI3KV9GXZ4 949 aa17.3■□□□□ 0.36
VIPAS39-208ENST00000556412 FGFR2P21802 821 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 GYG1P46976 350 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 PRELPP51888 382 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 KIAA2012Q0VF49 1180 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 ANKRD45Q5TZF3 282 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 AACSQ86V21 672 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 VPS37DQ86XT2 251 aa17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 CLASRPQ8N2M8 674 aaKnown RBP17.29■□□□□ 0.36
VIPAS39-208ENST00000556412 GORABQ5T7V8 394 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 C9orf131Q5VYM1 1079 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 ERICH6BQ5W0A0 696 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 JDP2Q8WYK2 163 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 DBNDD1Q9H9R9 158 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 MED23Q9ULK4 1368 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 ADORA1P30542 326 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 CAVIN4Q5BKX8 364 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 NIM1KQ8IY84 436 aa17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 CCDC8Q9H0W5 538 aaPredicted RBP17.28■□□□□ 0.36
VIPAS39-208ENST00000556412 ZNF609O15014 1411 aa17.27■□□□□ 0.36
VIPAS39-208ENST00000556412 ZNF804AQ7Z570 1209 aa17.27■□□□□ 0.36
VIPAS39-208ENST00000556412 EAF2Q96CJ1 260 aaPredicted RBP17.27■□□□□ 0.36
VIPAS39-208ENST00000556412 GPR108Q9NPR9 543 aa17.27■□□□□ 0.36
VIPAS39-208ENST00000556412 PPP4R2Q9NY27 417 aa17.27■□□□□ 0.36
VIPAS39-208ENST00000556412 ARFGEF1Q9Y6D6 1849 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 IFIT2P09913 472 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 BCAMP50895 628 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 SMC5Q8IY18 1101 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 XAGE2Q96GT9 111 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 VPS33BQ9H267 617 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 TLR7Q9NYK1 1049 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 ECE2O60344 883 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 HIBADHP31937 336 aaKnown RBP17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 DBNDD2Q9BQY9 259 aa17.26■□□□□ 0.35
VIPAS39-208ENST00000556412 FRAT2O75474 233 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-208ENST00000556412 FBXW7Q969H0 707 aa17.25■□□□□ 0.35
VIPAS39-208ENST00000556412 FAM84BQ96KN1 310 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-208ENST00000556412 IQSEC3Q9UPP2 1182 aaPredicted RBP17.25■□□□□ 0.35
VIPAS39-208ENST00000556412 IRS2Q9Y4H2 1338 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 C15orf52Q6ZUT6 534 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 LNPKQ9C0E8 428 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 COA1Q9GZY4 146 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 DBNLQ9UJU6 430 aaKnown RBP17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 LTBP1Q14766 1721 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 PHKA1P46020 1223 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 CD209Q9NNX6 404 aa17.24■□□□□ 0.35
VIPAS39-208ENST00000556412 CCDC102BQ68D86 513 aa17.23■□□□□ 0.35
VIPAS39-208ENST00000556412 CENPQQ7L2Z9 268 aaPredicted RBP17.23■□□□□ 0.35
VIPAS39-208ENST00000556412 ZNRF3Q9ULT6 936 aa17.23■□□□□ 0.35
VIPAS39-208ENST00000556412 CCDC158Q5M9N0 1113 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 TTC39AQ5SRH9 613 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 FBXO33Q7Z6M2 555 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 CHD1LQ86WJ1 897 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 C16orf71Q8IYS4 520 aaPredicted RBP17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 GNL3LQ9NVN8 582 aaKnown RBP17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 JAG2Q9Y219 1238 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 UTRNP46939 3433 aa17.22■□□□□ 0.35
VIPAS39-208ENST00000556412 RAD17O75943 681 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 EIF6P56537 245 aaKnown RBP17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 NUCB1Q02818 461 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 PODNQ7Z5L7 613 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 KCNQ5Q9NR82 932 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 COL4A5P29400 1685 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 YDJCA8MPS7 323 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 CHAF1AQ13111 956 aaPredicted RBP17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 FER1L6Q2WGJ9 1857 aa17.21■□□□□ 0.35
VIPAS39-208ENST00000556412 KDM2BQ8NHM5 1336 aa17.2■□□□□ 0.34
VIPAS39-208ENST00000556412 OTUD7AQ8TE49 926 aaPredicted RBP17.2■□□□□ 0.34
VIPAS39-208ENST00000556412 IL1R1P14778 569 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 GTF2IP78347 998 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 GJA3Q9Y6H8 435 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 ZNF541Q9H0D2 1346 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 FZD9O00144 591 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 TSHZ3Q63HK5 1081 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 TDRD7Q8NHU6 1098 aaKnown RBP17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 GPATCH3Q96I76 525 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 GTF3C3Q9Y5Q9 886 aa17.19■□□□□ 0.34
VIPAS39-208ENST00000556412 A0A1B0GUL6 1792 aa17.18■□□□□ 0.34
VIPAS39-208ENST00000556412 UQCRFS1P1P0C7P4 283 aa17.18■□□□□ 0.34
VIPAS39-208ENST00000556412 CXCL9Q07325 125 aa17.18■□□□□ 0.34
VIPAS39-208ENST00000556412 CIAPIN1Q6FI81 312 aa17.18■□□□□ 0.34
VIPAS39-208ENST00000556412 USP17L3A6NCW0 530 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 USP17L4A6NCW7 530 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 RASGRF1Q13972 1273 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 TTLL5Q6EMB2 1281 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 USP17L1Q7RTZ2 530 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 SNRKQ9NRH2 765 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 PSMD14O00487 310 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 MX1P20591 662 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 SCARF1Q14162 830 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 PI16Q6UXB8 463 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 MXD3Q9BW11 206 aa17.17■□□□□ 0.34
VIPAS39-208ENST00000556412 ECHDC1Q9NTX5 307 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms