RNA–Protein interactions for RNA: ENST00000555961.1

NEK9-208, Transcript of NIMA related kinase 9, humanhuman

TSL 3

Gene NEK9, Length 288 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-208ENST00000555961 KLHL23Q8NBE8 558 aa3.35□□□□□ -1.87
NEK9-208ENST00000555961 STK32AQ8WU08 396 aa3.35□□□□□ -1.87
NEK9-208ENST00000555961 UTP4Q969X6 686 aaKnown RBP3.35□□□□□ -1.87
NEK9-208ENST00000555961 SAP130Q9H0E3 1048 aa3.35□□□□□ -1.87
NEK9-208ENST00000555961 ABI2Q9NYB9 513 aaPredicted RBP3.35□□□□□ -1.87
NEK9-208ENST00000555961 ZMIZ1Q9ULJ6 1067 aa3.35□□□□□ -1.87
NEK9-208ENST00000555961 USTQ9Y2C2 406 aa3.35□□□□□ -1.87
NEK9-208ENST00000555961 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3.34□□□□□ -1.87
NEK9-208ENST00000555961 TNFRSF10BO14763 440 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 CDC25BP30305 580 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 SSTR4P31391 388 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 ARL4DP49703 201 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 ATP11AP98196 1134 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 OCLNQ16625 522 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 DUOXA2Q1HG44 320 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 UVSSAQ2YD98 709 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 PDE12Q6L8Q7 609 aaKnown RBP3.34□□□□□ -1.87
NEK9-208ENST00000555961 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.34□□□□□ -1.87
NEK9-208ENST00000555961 AGGF1Q8N302 714 aaeCLIP3.34□□□□□ -1.87
NEK9-208ENST00000555961 CLP1Q92989 425 aaKnown RBP3.34□□□□□ -1.87
NEK9-208ENST00000555961 C1orf115Q9H7X2 142 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 SEC31BQ9NQW1 1179 aa3.34□□□□□ -1.87
NEK9-208ENST00000555961 ARID3CA6NKF2 412 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 FSCN2O14926 492 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 IGLV1-40P01703 118 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 ATP2B4P23634 1241 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 TMEM164Q5U3C3 297 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 MCTP1Q6DN14 999 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 TXNDC11Q6PKC3 985 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 Q6ZS46 218 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 GIMAP7Q8NHV1 300 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 CARD10Q9BWT7 1032 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 PBX4Q9BYU1 374 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 RASSF4Q9H2L5 321 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 ELP3Q9H9T3 547 aa3.33□□□□□ -1.88
NEK9-208ENST00000555961 H3BRJ5 948 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 GAS2O43903 313 aaKnown RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 PDIA4P13667 645 aaKnown RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 CES1P23141 567 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 IRAK1P51617 712 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 PIP4K2BP78356 416 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 DNM1Q05193 864 aaKnown RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 FAM69CQ0P6D2 419 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 AAMPQ13685 434 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 COL13A1Q5TAT6 717 aaPredicted RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 ANKRD34AQ69YU3 496 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 FDX2Q6P4F2 183 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 INTS5Q6P9B9 1019 aaKnown RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 WNT8BQ93098 351 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 PMEPA1Q969W9 287 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 NUDT16Q96DE0 195 aaKnown RBP3.32□□□□□ -1.88
NEK9-208ENST00000555961 FMNL2Q96PY5 1086 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 TRAIPQ9BWF2 469 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 KCNF1Q9H3M0 494 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 MTMR7Q9Y216 660 aa3.32□□□□□ -1.88
NEK9-208ENST00000555961 EIF4EBP3O60516 100 aaPredicted RBP3.31□□□□□ -1.88
NEK9-208ENST00000555961 KIF4AO95239 1232 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 C8orf34Q49A92 452 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 NOM1Q5C9Z4 860 aaKnown RBP3.31□□□□□ -1.88
NEK9-208ENST00000555961 LCE4AQ5TA78 99 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 ALKBH2Q6NS38 261 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 CAPN12Q6ZSI9 719 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 CEP120Q8N960 986 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 GALNT11Q8NCW6 608 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 SLC7A3Q8WY07 619 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 EDEM1Q92611 657 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 DBNDD2Q9BQY9 259 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 RNF208Q9H0X6 261 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 OSGEPQ9NPF4 335 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 SH2B1Q9NRF2 756 aaPredicted RBP3.31□□□□□ -1.88
NEK9-208ENST00000555961 KANSL3Q9P2N6 904 aa3.31□□□□□ -1.88
NEK9-208ENST00000555961 PDE2AO00408 941 aaPredicted RBP3.3□□□□□ -1.88
NEK9-208ENST00000555961 WISP1O95388 367 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 CYP2E1P05181 493 aaPredicted RBP3.3□□□□□ -1.88
NEK9-208ENST00000555961 EPHA1P21709 976 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 NLRP12P59046 1061 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 NFIAQ12857 509 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 RNF43Q68DV7 783 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 KIAA1211Q6ZU35 1233 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 CLEC10AQ8IUN9 316 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 HELQQ8TDG4 1101 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 UBASH3BQ8TF42 649 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 MYRFLQ96LU7 910 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 UBL7Q96S82 380 aaPredicted RBP3.3□□□□□ -1.88
NEK9-208ENST00000555961 ARID3AQ99856 593 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 RUSC1Q9BVN2 902 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 ADAM19Q9H013 955 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 C7orf69Q9H7B7 122 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 TMEM63CQ9P1W3 806 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 SEPT3Q9UH03 358 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 HIF3AQ9Y2N7 669 aa3.3□□□□□ -1.88
NEK9-208ENST00000555961 ZBTB39O15060 712 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 PHACTR2O75167 634 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 TGFB1P01137 390 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 BMP3P12645 472 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 EDN3P14138 238 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 MZF1P28698 734 aaPredicted RBP3.29□□□□□ -1.88
NEK9-208ENST00000555961 RXRBP28702 533 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 USP5P45974 858 aa3.29□□□□□ -1.88
NEK9-208ENST00000555961 CD97P48960 835 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms