RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 FRAT1Q92837 279 aaPredicted RBP8.66□□□□□ -1.02
SLIRP-204ENST00000555890 LTV1Q96GA3 475 aaPredicted RBP8.66□□□□□ -1.02
SLIRP-204ENST00000555890 ZIC5Q96T25 663 aa8.66□□□□□ -1.02
SLIRP-204ENST00000555890 ZNF853P0CG23 659 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 VARS2Q5ST30 1063 aaKnown RBP8.65□□□□□ -1.02
SLIRP-204ENST00000555890 DPF3Q92784 378 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 SMC4Q9NTJ3 1288 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 HACL1Q9UJ83 578 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 ADGRG1Q9Y653 693 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 RGPD2P0DJD1 1756 aa8.65□□□□□ -1.02
SLIRP-204ENST00000555890 PALLDQ8WX93 1383 aa8.64□□□□□ -1.03
SLIRP-204ENST00000555890 EPHX2P34913 555 aa8.64□□□□□ -1.03
SLIRP-204ENST00000555890 MTHFSDQ2M296 383 aaKnown RBP8.64□□□□□ -1.03
SLIRP-204ENST00000555890 LINC00116Q8NCU8 138 aa8.64□□□□□ -1.03
SLIRP-204ENST00000555890 THUMPD2Q9BTF0 503 aaKnown RBP8.64□□□□□ -1.03
SLIRP-204ENST00000555890 TBC1D2Q9BYX2 928 aa8.64□□□□□ -1.03
SLIRP-204ENST00000555890 SNRKQ9NRH2 765 aa8.64□□□□□ -1.03
SLIRP-204ENST00000555890 KIF16BQ96L93 1317 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 SSFA2P28290 1259 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 PPP2R2DQ66LE6 453 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 ZNF687Q8N1G0 1237 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 NLRP7Q8WX94 980 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 SSH1Q8WYL5 1049 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 BCL2L13Q9BXK5 485 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 MBIPQ9NS73 344 aa8.63□□□□□ -1.03
SLIRP-204ENST00000555890 ZFHX4Q86UP3 3567 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 GNAT3A8MTJ3 354 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 CHL1O00533 1208 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 VAMP4O75379 141 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 DCTN1Q14203 1278 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 TWISTNBQ3B726 338 aaPredicted RBP8.62□□□□□ -1.03
SLIRP-204ENST00000555890 PADI6Q6TGC4 694 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 CENPQQ7L2Z9 268 aaPredicted RBP8.62□□□□□ -1.03
SLIRP-204ENST00000555890 MCM10Q7L590 875 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 FTSJ3Q8IY81 847 aaKnown RBP8.62□□□□□ -1.03
SLIRP-204ENST00000555890 DZIP1LQ8IYY4 767 aaKnown RBP8.62□□□□□ -1.03
SLIRP-204ENST00000555890 PANK1Q8TE04 598 aa8.62□□□□□ -1.03
SLIRP-204ENST00000555890 ITGB4P16144 1822 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 EYSQ5T1H1 3165 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 EPG5Q9HCE0 2579 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 NFKBIEO00221 500 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 ITPK1Q13572 414 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 AMOTQ4VCS5 1084 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 PLEKHO1Q53GL0 409 aaPredicted RBP8.61□□□□□ -1.03
SLIRP-204ENST00000555890 ATF7IPQ6VMQ6 1270 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 SYNE4Q8N205 404 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 RETREG2Q8NC44 543 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 ZNF296Q8WUU4 475 aaPredicted RBP8.61□□□□□ -1.03
SLIRP-204ENST00000555890 ARHGAP45Q92619 1136 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 LRFN3Q9BTN0 628 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 CHMP4BQ9H444 224 aaKnown RBP8.61□□□□□ -1.03
SLIRP-204ENST00000555890 PRM3Q9NNZ6 103 aa8.61□□□□□ -1.03
SLIRP-204ENST00000555890 MVPQ14764 893 aaKnown RBP8.6□□□□□ -1.03
SLIRP-204ENST00000555890 TUSC1Q2TAM9 212 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 NBPF6Q5VWK0 638 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 MPRIPQ6WCQ1 1025 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 NLGN1Q8N2Q7 840 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 TTC13Q8NBP0 860 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 MAFAQ8NHW3 353 aaPredicted RBP8.6□□□□□ -1.03
SLIRP-204ENST00000555890 PIGBQ92521 554 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 NBPF4Q96M43 638 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 BABAM1Q9NWV8 329 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 NOB1Q9ULX3 412 aaKnown RBP8.6□□□□□ -1.03
SLIRP-204ENST00000555890 DDX19BQ9UMR2 479 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 NR2E3Q9Y5X4 410 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 TIAM2Q8IVF5 1701 aa8.6□□□□□ -1.03
SLIRP-204ENST00000555890 ELL2O00472 640 aaPredicted RBP8.59□□□□□ -1.03
SLIRP-204ENST00000555890 TCERG1O14776 1098 aaKnown RBP8.59□□□□□ -1.03
SLIRP-204ENST00000555890 CYP27B1O15528 508 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 CHRNA5P30532 468 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 PDE4CQ08493 712 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 ACAP1Q15027 740 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 RIC3Q7Z5B4 369 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 MRPL50Q8N5N7 158 aaKnown RBP8.59□□□□□ -1.03
SLIRP-204ENST00000555890 USHBP1Q8N6Y0 703 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 C8orf58Q8NAV2 365 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 GUCD1Q96NT3 240 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 LIMD1Q9UGP4 676 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 PARP3Q9Y6F1 533 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 C4AP0C0L4 1744 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 CACNA1FO60840 1977 aa8.59□□□□□ -1.03
SLIRP-204ENST00000555890 SOS1Q07889 1333 aaPredicted RBP8.58□□□□□ -1.04
SLIRP-204ENST00000555890 CCDC88AQ3V6T2 1871 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 LOC102724428A0A0B4J2F2 783 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 TRAF5O00463 557 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 GYS1P13807 737 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 TRIM27P14373 513 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 SIK1P57059 783 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 KIF23Q02241 960 aaPredicted RBP8.58□□□□□ -1.04
SLIRP-204ENST00000555890 TAF7Q15545 349 aaPredicted RBP8.58□□□□□ -1.04
SLIRP-204ENST00000555890 LRIT3Q3SXY7 679 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 C6orf132Q5T0Z8 1188 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 MTMR14Q8NCE2 650 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 CHMP4AQ9BY43 222 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 API5Q9BZZ5 524 aaKnown RBP8.58□□□□□ -1.04
SLIRP-204ENST00000555890 GDPD2Q9HCC8 539 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 TSPYL4Q9UJ04 414 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 PCDHGA4Q9Y5G9 962 aa8.58□□□□□ -1.04
SLIRP-204ENST00000555890 NCAPD2Q15021 1401 aa8.57□□□□□ -1.04
SLIRP-204ENST00000555890 CELF2O95319 508 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms