RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 SDSP20132 328 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 PDE1AP54750 535 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 BMP2KLQ5H9B9 411 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 Q6ZUG5 572 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 CHST3Q7LGC8 479 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 FAM114A1Q8IWE2 563 aa9.41□□□□□ -0.9
SYNE2-220ENST00000555612 TMCO5BA8MYB1 307 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 A1BGP04217 495 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 LUZP1Q86V48 1076 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 HOOK3Q86VS8 718 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 NIM1KQ8IY84 436 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC102BQ68D86 513 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 ARHGEF10O15013 1369 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 CTAGE5O15320 804 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 USO1O60763 962 aaKnown RBP9.4□□□□□ -0.9
SYNE2-220ENST00000555612 KRT13P13646 458 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 GOPCQ9HD26 462 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 IVNS1ABPQ9Y6Y0 642 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 RTL9Q8NET4 1388 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 ITSN2Q9NZM3 1697 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 MBD4O95243 580 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 PRPF4BQ13523 1007 aaKnown RBP9.4□□□□□ -0.9
SYNE2-220ENST00000555612 TAF12Q16514 161 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 DNAJC10Q8IXB1 793 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 TMX1Q9H3N1 280 aa9.4□□□□□ -0.9
SYNE2-220ENST00000555612 DDX21Q9NR30 783 aaKnown RBP eCLIP9.4□□□□□ -0.9
SYNE2-220ENST00000555612 KIF21AQ7Z4S6 1674 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 AKNAD1Q5T1N1 836 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 RRAGBQ5VZM2 374 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 USP37Q86T82 979 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 ANKRD44Q8N8A2 993 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 KAT6BQ8WYB5 2073 aa9.4□□□□□ -0.91
SYNE2-220ENST00000555612 KIF5CO60282 957 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 NOP2P46087 812 aaKnown RBP9.39□□□□□ -0.91
SYNE2-220ENST00000555612 PLBD2Q8NHP8 589 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 GPCPD1Q9NPB8 672 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 SUPT20HQ8NEM7 779 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 ZKSCAN3Q9BRR0 538 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 KANK3Q6NY19 840 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 PRAG1Q86YV5 1406 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 ZSCAN12O43309 604 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 TAF5LO75529 589 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 IGHDP01880 384 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 ASIC1P78348 528 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 KIF4BQ2VIQ3 1234 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 PPIP5K2O43314 1243 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 PDE8AO60658 829 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 LEKR1Q6ZMV7 388 aa9.39□□□□□ -0.91
SYNE2-220ENST00000555612 DDX19AQ9NUU7 478 aaKnown RBP9.39□□□□□ -0.91
SYNE2-220ENST00000555612 NPC1L1Q9UHC9 1359 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 SPATA31E1Q6ZUB1 1445 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 PARP1P09874 1014 aaKnown RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 RXRAP19793 462 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 TCIRG1Q13488 830 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 CCDC102AQ96A19 550 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 PABPN1LA6NDY0 278 aaKnown RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 ARHGAP27Q6ZUM4 889 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 DHX37Q8IY37 1157 aaKnown RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 IMPG2Q9BZV3 1241 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 QTRT2Q9H974 415 aaKnown RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 EIF3JO75822 258 aaKnown RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 RGS22Q8NE09 1264 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 GPHNQ9NQX3 736 aaPredicted RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 CLIP2Q9UDT6 1046 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 MRVI1Q9Y6F6 885 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 FAM13AO94988 1023 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 TCP10Q12799 353 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 SLC52A2Q9HAB3 445 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 LGR6Q9HBX8 967 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 ARHGEF10LQ9HCE6 1279 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 RMND1Q9NWS8 449 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 BMP15O95972 392 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 PDE6BP35913 854 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 KRT79Q5XKE5 535 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 ZNF594Q96JF6 807 aaPredicted RBP9.38□□□□□ -0.91
SYNE2-220ENST00000555612 MAST3O60307 1309 aa9.38□□□□□ -0.91
SYNE2-220ENST00000555612 SYKP43405 635 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 NUCB1Q02818 461 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 PUM3Q15397 648 aaKnown RBP9.37□□□□□ -0.91
SYNE2-220ENST00000555612 FCHSD1Q86WN1 690 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 MARCKSP29966 332 aaPredicted RBP9.37□□□□□ -0.91
SYNE2-220ENST00000555612 LMAN1P49257 510 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 SPAG5Q96R06 1193 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 FERMT1Q9BQL6 677 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 CWC15Q9P013 229 aaKnown RBP9.37□□□□□ -0.91
SYNE2-220ENST00000555612 STX1AQ16623 288 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 BRDTQ58F21 947 aaPredicted RBP9.37□□□□□ -0.91
SYNE2-220ENST00000555612 ESYT1Q9BSJ8 1104 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 SBNO1A3KN83 1393 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 TIMM10P62072 90 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 TMC6Q7Z403 805 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 DYDC1Q8WWB3 177 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 TBC1D5Q92609 795 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 ARMT1Q9H993 441 aa9.37□□□□□ -0.91
SYNE2-220ENST00000555612 EYA2O00167 538 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 METTL22Q9BUU2 404 aaPredicted RBP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 PODXL2Q9NZ53 605 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 RBM27Q9P2N5 1060 aaKnown RBP9.36□□□□□ -0.91
SYNE2-220ENST00000555612 GINS2Q9Y248 185 aa9.36□□□□□ -0.91
SYNE2-220ENST00000555612 ZFYVE9O95405 1425 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms