RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 ZNF609O15014 1411 aa25.77■■□□□ 1.72
VTI1B-205ENST00000555543 SAMD7Q7Z3H4 446 aa25.76■■□□□ 1.71
VTI1B-205ENST00000555543 FRAT1Q92837 279 aaPredicted RBP25.76■■□□□ 1.71
VTI1B-205ENST00000555543 COA1Q9GZY4 146 aa25.76■■□□□ 1.71
VTI1B-205ENST00000555543 H7C1D1 291 aa25.75■■□□□ 1.71
VTI1B-205ENST00000555543 PLIN1O60240 522 aa25.75■■□□□ 1.71
VTI1B-205ENST00000555543 UBTFL1P0CB47 393 aaPredicted RBP25.75■■□□□ 1.71
VTI1B-205ENST00000555543 INTS3Q68E01 1043 aaKnown RBP25.75■■□□□ 1.71
VTI1B-205ENST00000555543 RSBN1LQ6PCB5 846 aaPredicted RBP25.75■■□□□ 1.71
VTI1B-205ENST00000555543 KLHDC4Q8TBB5 520 aa25.75■■□□□ 1.71
VTI1B-205ENST00000555543 USP17L3A6NCW0 530 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 USP17L4A6NCW7 530 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 FMR1Q06787 632 aaKnown RBP eCLIP25.74■■□□□ 1.71
VTI1B-205ENST00000555543 TBC1D10BQ4KMP7 808 aaPredicted RBP25.74■■□□□ 1.71
VTI1B-205ENST00000555543 USP17L1Q7RTZ2 530 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 GMLQ99445 158 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 MEIS3Q99687 375 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 RIPOR2Q9Y4F9 1068 aa25.74■■□□□ 1.71
VTI1B-205ENST00000555543 LRRC24Q50LG9 513 aa25.73■■□□□ 1.71
VTI1B-205ENST00000555543 ATF7IPQ6VMQ6 1270 aa25.73■■□□□ 1.71
VTI1B-205ENST00000555543 C15orf52Q6ZUT6 534 aaKnown RBP25.73■■□□□ 1.71
VTI1B-205ENST00000555543 MXD3Q9BW11 206 aa25.73■■□□□ 1.71
VTI1B-205ENST00000555543 CREBZFQ9NS37 354 aa25.73■■□□□ 1.71
VTI1B-205ENST00000555543 IPO8O15397 1037 aaKnown RBP25.72■■□□□ 1.71
VTI1B-205ENST00000555543 RFX5P48382 616 aaPredicted RBP25.72■■□□□ 1.71
VTI1B-205ENST00000555543 DACT2Q5SW24 774 aa25.72■■□□□ 1.71
VTI1B-205ENST00000555543 AGBL3Q8NEM8 1001 aa25.72■■□□□ 1.71
VTI1B-205ENST00000555543 KLRG1Q96E93 195 aa25.72■■□□□ 1.71
VTI1B-205ENST00000555543 PGAP2Q9UHJ9 254 aa25.72■■□□□ 1.71
VTI1B-205ENST00000555543 TRAF5O00463 557 aa25.71■■□□□ 1.71
VTI1B-205ENST00000555543 CLUAP1Q96AJ1 413 aa25.71■■□□□ 1.71
VTI1B-205ENST00000555543 LRRFIP2Q9Y608 721 aaKnown RBP25.71■■□□□ 1.71
VTI1B-205ENST00000555543 FBXW7Q969H0 707 aa25.7■■□□□ 1.7
VTI1B-205ENST00000555543 CD209Q9NNX6 404 aa25.7■■□□□ 1.7
VTI1B-205ENST00000555543 MROH5Q6ZUA9 1318 aa25.69■■□□□ 1.7
VTI1B-205ENST00000555543 ZNF280AP59817 542 aaPredicted RBP25.69■■□□□ 1.7
VTI1B-205ENST00000555543 RBM26Q5T8P6 1007 aaKnown RBP25.69■■□□□ 1.7
VTI1B-205ENST00000555543 STRIP1Q5VSL9 837 aa25.69■■□□□ 1.7
VTI1B-205ENST00000555543 ZC3H15Q8WU90 426 aaKnown RBP25.69■■□□□ 1.7
VTI1B-205ENST00000555543 GLIS2Q9BZE0 524 aaPredicted RBP25.69■■□□□ 1.7
VTI1B-205ENST00000555543 TMEM88BA6NKF7 163 aa25.68■■□□□ 1.7
VTI1B-205ENST00000555543 KIF4BQ2VIQ3 1234 aa25.68■■□□□ 1.7
VTI1B-205ENST00000555543 ZKSCAN2Q63HK3 967 aa25.68■■□□□ 1.7
VTI1B-205ENST00000555543 VGLL2Q8N8G2 317 aa25.68■■□□□ 1.7
VTI1B-205ENST00000555543 PTPN12Q05209 780 aaKnown RBP25.67■■□□□ 1.7
VTI1B-205ENST00000555543 UBE4AQ14139 1066 aa25.67■■□□□ 1.7
VTI1B-205ENST00000555543 METTL24Q5JXM2 366 aa25.67■■□□□ 1.7
VTI1B-205ENST00000555543 ZNF804AQ7Z570 1209 aa25.67■■□□□ 1.7
VTI1B-205ENST00000555543 PCNTO95613 3336 aa25.67■■□□□ 1.7
VTI1B-205ENST00000555543 USP17L8P0C7I0 530 aa25.66■■□□□ 1.7
VTI1B-205ENST00000555543 GTF2IP78347 998 aa25.66■■□□□ 1.7
VTI1B-205ENST00000555543 TTLL5Q6EMB2 1281 aa25.66■■□□□ 1.7
VTI1B-205ENST00000555543 ASTN2O75129 1339 aaPredicted RBP25.65■■□□□ 1.7
VTI1B-205ENST00000555543 IL1R1P14778 569 aa25.65■■□□□ 1.7
VTI1B-205ENST00000555543 TMEM57Q8N5G2 664 aa25.65■■□□□ 1.7
VTI1B-205ENST00000555543 TRPM7Q96QT4 1865 aa25.64■■□□□ 1.7
VTI1B-205ENST00000555543 GNAI3P08754 354 aa25.64■■□□□ 1.7
VTI1B-205ENST00000555543 GYG1P46976 350 aa25.64■■□□□ 1.7
VTI1B-205ENST00000555543 MYOZ2Q9NPC6 264 aa25.64■■□□□ 1.7
VTI1B-205ENST00000555543 MKRN1Q9UHC7 482 aaKnown RBP25.64■■□□□ 1.7
VTI1B-205ENST00000555543 MYO3BQ8WXR4 1341 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 EYA2O00167 538 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 CST9Q5W186 159 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 DLK2Q6UY11 383 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 ATG9AQ7Z3C6 839 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 JMYQ8N9B5 988 aa25.63■■□□□ 1.69
VTI1B-205ENST00000555543 CNTNAP1P78357 1384 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 PDE8BO95263 885 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 CERS5Q8N5B7 392 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 FAM84BQ96KN1 310 aaPredicted RBP25.62■■□□□ 1.69
VTI1B-205ENST00000555543 SIL1Q9H173 461 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 GGA3Q9NZ52 723 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 HDAC5Q9UQL6 1122 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 JAG2Q9Y219 1238 aa25.62■■□□□ 1.69
VTI1B-205ENST00000555543 CDC37L1Q7L3B6 337 aa25.61■■□□□ 1.69
VTI1B-205ENST00000555543 USP48Q86UV5 1035 aa25.61■■□□□ 1.69
VTI1B-205ENST00000555543 PA2G4Q9UQ80 394 aaKnown RBP25.61■■□□□ 1.69
VTI1B-205ENST00000555543 ADM5C9JUS6 153 aa25.6■■□□□ 1.69
VTI1B-205ENST00000555543 RLBP1P12271 317 aa25.6■■□□□ 1.69
VTI1B-205ENST00000555543 SCARF1Q14162 830 aa25.6■■□□□ 1.69
VTI1B-205ENST00000555543 KIAA0825Q8IV33 1275 aa25.6■■□□□ 1.69
VTI1B-205ENST00000555543 POLR2AP24928 1970 aaKnown RBP25.6■■□□□ 1.69
VTI1B-205ENST00000555543 FGFR2P21802 821 aa25.59■■□□□ 1.69
VTI1B-205ENST00000555543 HIBADHP31937 336 aaKnown RBP25.59■■□□□ 1.69
VTI1B-205ENST00000555543 KRT26Q7Z3Y9 468 aa25.59■■□□□ 1.69
VTI1B-205ENST00000555543 TDRD7Q8NHU6 1098 aaKnown RBP25.59■■□□□ 1.69
VTI1B-205ENST00000555543 CELF2O95319 508 aaKnown RBP25.58■■□□□ 1.69
VTI1B-205ENST00000555543 MTX1Q13505 466 aa25.58■■□□□ 1.69
VTI1B-205ENST00000555543 DCPSQ96C86 337 aaKnown RBP25.58■■□□□ 1.69
VTI1B-205ENST00000555543 ABT1Q9ULW3 272 aaKnown RBP25.58■■□□□ 1.69
VTI1B-205ENST00000555543 CIAO1O76071 339 aa25.57■■□□□ 1.68
VTI1B-205ENST00000555543 PUM3Q15397 648 aaKnown RBP25.57■■□□□ 1.68
VTI1B-205ENST00000555543 NBPF9Q3BBW0 867 aa25.57■■□□□ 1.68
VTI1B-205ENST00000555543 ANGEL2Q5VTE6 544 aaKnown RBP25.57■■□□□ 1.68
VTI1B-205ENST00000555543 FBXO33Q7Z6M2 555 aa25.57■■□□□ 1.68
VTI1B-205ENST00000555543 FTSJ3Q8IY81 847 aaKnown RBP25.57■■□□□ 1.68
VTI1B-205ENST00000555543 DZIP1LQ8IYY4 767 aaKnown RBP25.57■■□□□ 1.68
VTI1B-205ENST00000555543 OGFOD1Q8N543 542 aa25.57■■□□□ 1.68
VTI1B-205ENST00000555543 COPRSQ9NQ92 184 aa25.57■■□□□ 1.68
VTI1B-205ENST00000555543 FAM205AQ6ZU69 1335 aa25.57■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms