RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 FAM20CQ8IXL6 584 aa10.04□□□□□ -0.8
VRK1-205ENST00000555402 SHKBP1Q8TBC3 707 aa10.04□□□□□ -0.8
VRK1-205ENST00000555402 KRTAP4-7Q9BYR0 210 aa10.04□□□□□ -0.8
VRK1-205ENST00000555402 ADGRE2Q9UHX3 823 aa10.04□□□□□ -0.8
VRK1-205ENST00000555402 DDX3YO15523 660 aaKnown RBP10.03□□□□□ -0.8
VRK1-205ENST00000555402 BRD2P25440 801 aaKnown RBP10.03□□□□□ -0.8
VRK1-205ENST00000555402 FAM117BQ6P1L5 589 aa10.03□□□□□ -0.8
VRK1-205ENST00000555402 FOXD4L4Q8WXT5 416 aaPredicted RBP10.02□□□□□ -0.81
VRK1-205ENST00000555402 RASSF4Q9H2L5 321 aa10.02□□□□□ -0.81
VRK1-205ENST00000555402 ADAM11O75078 769 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 BMP3P12645 472 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 FAM26DQ5JW98 314 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 UBASH3BQ8TF42 649 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 PIK3R5Q8WYR1 880 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 SAP130Q9H0E3 1048 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 KCNF1Q9H3M0 494 aa10.01□□□□□ -0.81
VRK1-205ENST00000555402 SH2B1Q9NRF2 756 aaPredicted RBP10.01□□□□□ -0.81
VRK1-205ENST00000555402 SART1O43290 800 aaKnown RBP10□□□□□ -0.81
VRK1-205ENST00000555402 EPHA1P21709 976 aa10□□□□□ -0.81
VRK1-205ENST00000555402 SCNN1AP37088 669 aa10□□□□□ -0.81
VRK1-205ENST00000555402 TTC39BQ5VTQ0 682 aaPredicted RBP10□□□□□ -0.81
VRK1-205ENST00000555402 PPP1R3FQ6ZSY5 799 aaPredicted RBP10□□□□□ -0.81
VRK1-205ENST00000555402 BEND4Q6ZU67 534 aa10□□□□□ -0.81
VRK1-205ENST00000555402 CCDC82Q8N4S0 544 aa10□□□□□ -0.81
VRK1-205ENST00000555402 KLHDC7BQ96G42 594 aa10□□□□□ -0.81
VRK1-205ENST00000555402 PRIMPOLQ96LW4 560 aa9.99□□□□□ -0.81
VRK1-205ENST00000555402 PBX4Q9BYU1 374 aa9.99□□□□□ -0.81
VRK1-205ENST00000555402 SEC31BQ9NQW1 1179 aa9.99□□□□□ -0.81
VRK1-205ENST00000555402 FAM13BQ9NYF5 915 aa9.99□□□□□ -0.81
VRK1-205ENST00000555402 KIF4AO95239 1232 aa9.98□□□□□ -0.81
VRK1-205ENST00000555402 C16orf46Q6P387 395 aa9.98□□□□□ -0.81
VRK1-205ENST00000555402 FNDC3AQ9Y2H6 1198 aaKnown RBP9.98□□□□□ -0.81
VRK1-205ENST00000555402 WDR64B1ANS9 1081 aa9.97□□□□□ -0.81
VRK1-205ENST00000555402 HOXA10P31260 410 aaPredicted RBP9.97□□□□□ -0.81
VRK1-205ENST00000555402 ANKRD34AQ69YU3 496 aa9.97□□□□□ -0.81
VRK1-205ENST00000555402 ADAM19Q9H013 955 aa9.97□□□□□ -0.81
VRK1-205ENST00000555402 PTPRAP18433 802 aa9.96□□□□□ -0.82
VRK1-205ENST00000555402 PREPP48147 710 aa9.96□□□□□ -0.82
VRK1-205ENST00000555402 CEP120Q8N960 986 aa9.96□□□□□ -0.82
VRK1-205ENST00000555402 CCDC97Q96F63 343 aaPredicted RBP9.96□□□□□ -0.82
VRK1-205ENST00000555402 POP1Q99575 1024 aaKnown RBP9.96□□□□□ -0.82
VRK1-205ENST00000555402 HIF3AQ9Y2N7 669 aa9.96□□□□□ -0.82
VRK1-205ENST00000555402 FAM177BA6PVY3 158 aa9.95□□□□□ -0.82
VRK1-205ENST00000555402 COL26A1Q96A83 441 aa9.95□□□□□ -0.82
VRK1-205ENST00000555402 RNF208Q9H0X6 261 aa9.95□□□□□ -0.82
VRK1-205ENST00000555402 PIM2Q9P1W9 311 aa9.95□□□□□ -0.82
VRK1-205ENST00000555402 TNFRSF10BO14763 440 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 PRMT3O60678 531 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 CYP2E1P05181 493 aaPredicted RBP9.94□□□□□ -0.82
VRK1-205ENST00000555402 RFX1P22670 979 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 ABI1Q8IZP0 508 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 WNT8BQ93098 351 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 MFSD14AQ96MC6 490 aa9.94□□□□□ -0.82
VRK1-205ENST00000555402 ABI2Q9NYB9 513 aaPredicted RBP9.94□□□□□ -0.82
VRK1-205ENST00000555402 ZAP70P43403 619 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 PIP4K2BP78356 416 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 CDCA8Q53HL2 280 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 CFAP70Q5T0N1 1121 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 NCAPG2Q86XI2 1143 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 SERPINA10Q9UK55 444 aa9.93□□□□□ -0.82
VRK1-205ENST00000555402 NOVA2Q9UNW9 492 aaKnown RBP9.93□□□□□ -0.82
VRK1-205ENST00000555402 H3BRJ5 948 aa9.92□□□□□ -0.82
VRK1-205ENST00000555402 OCLNQ16625 522 aa9.92□□□□□ -0.82
VRK1-205ENST00000555402 SWI5Q1ZZU3 235 aa9.92□□□□□ -0.82
VRK1-205ENST00000555402 OSGEPQ9NPF4 335 aa9.92□□□□□ -0.82
VRK1-205ENST00000555402 CABP4P57796 275 aa9.91□□□□□ -0.82
VRK1-205ENST00000555402 FDX2Q6P4F2 183 aa9.91□□□□□ -0.82
VRK1-205ENST00000555402 GPR152Q8TDT2 470 aa9.91□□□□□ -0.82
VRK1-205ENST00000555402 RUSC1Q9BVN2 902 aa9.91□□□□□ -0.82
VRK1-205ENST00000555402 ATG3Q9NT62 314 aa9.91□□□□□ -0.82
VRK1-205ENST00000555402 ACIN1Q9UKV3 1341 aaKnown RBP9.9□□□□□ -0.82
VRK1-205ENST00000555402 NLRP12P59046 1061 aa9.9□□□□□ -0.82
VRK1-205ENST00000555402 GIMAP7Q8NHV1 300 aa9.9□□□□□ -0.82
VRK1-205ENST00000555402 ANGEL1Q9UNK9 670 aaKnown RBP9.9□□□□□ -0.82
VRK1-205ENST00000555402 LEMD3Q9Y2U8 911 aa9.9□□□□□ -0.82
VRK1-205ENST00000555402 MEGF11A6BM72 1044 aa9.89□□□□□ -0.83
VRK1-205ENST00000555402 MAP4P27816 1152 aaKnown RBP9.89□□□□□ -0.83
VRK1-205ENST00000555402 JAG1P78504 1218 aa9.89□□□□□ -0.83
VRK1-205ENST00000555402 OGFOD2Q6N063 350 aa9.89□□□□□ -0.83
VRK1-205ENST00000555402 CAPN12Q6ZSI9 719 aa9.89□□□□□ -0.83
VRK1-205ENST00000555402 GAS2O43903 313 aaKnown RBP9.88□□□□□ -0.83
VRK1-205ENST00000555402 NAA30Q147X3 362 aaPredicted RBP9.88□□□□□ -0.83
VRK1-205ENST00000555402 SGO2Q562F6 1265 aa9.88□□□□□ -0.83
VRK1-205ENST00000555402 CCDC39Q9UFE4 941 aa9.88□□□□□ -0.83
VRK1-205ENST00000555402 ZBTB39O15060 712 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 F13BP05160 661 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 MSMPQ1L6U9 139 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 FBXL6Q8N531 539 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 SLC7A3Q8WY07 619 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 MKNK1Q9BUB5 465 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 TMEM63CQ9P1W3 806 aa9.87□□□□□ -0.83
VRK1-205ENST00000555402 FOSL1P15407 271 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 FAM69CQ0P6D2 419 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 CBLL1Q75N03 491 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 OSBPL1AQ9BXW6 950 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 ELP3Q9H9T3 547 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 KANSL3Q9P2N6 904 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 SALL4Q9UJQ4 1053 aa9.86□□□□□ -0.83
VRK1-205ENST00000555402 ARID1BQ8NFD5 2236 aaPredicted RBP9.85□□□□□ -0.83
VRK1-205ENST00000555402 NFKBIEO00221 500 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms