RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SHTN1A0MZ66 631 aa20.21■□□□□ 0.83
CCDC88C-209ENST00000554872 RASSF10A6NK89 507 aa20.21■□□□□ 0.83
CCDC88C-209ENST00000554872 STRIP1Q5VSL9 837 aa20.21■□□□□ 0.83
CCDC88C-209ENST00000554872 CHMP3Q9Y3E7 222 aa20.21■□□□□ 0.83
CCDC88C-209ENST00000554872 LDHAL6AQ6ZMR3 332 aa20.2■□□□□ 0.82
CCDC88C-209ENST00000554872 TXNRD3Q86VQ6 643 aa20.2■□□□□ 0.82
CCDC88C-209ENST00000554872 ANKRD44Q8N8A2 993 aa20.2■□□□□ 0.82
CCDC88C-209ENST00000554872 BICC1Q9H694 974 aaKnown RBP20.2■□□□□ 0.82
CCDC88C-209ENST00000554872 TAF7LQ5H9L4 462 aa20.19■□□□□ 0.82
CCDC88C-209ENST00000554872 DACT2Q5SW24 774 aa20.19■□□□□ 0.82
CCDC88C-209ENST00000554872 CDC37L1Q7L3B6 337 aa20.19■□□□□ 0.82
CCDC88C-209ENST00000554872 NOB1Q9ULX3 412 aaKnown RBP20.19■□□□□ 0.82
CCDC88C-209ENST00000554872 KLRK1P26718 216 aa20.18■□□□□ 0.82
CCDC88C-209ENST00000554872 KCNJ4P48050 445 aa20.18■□□□□ 0.82
CCDC88C-209ENST00000554872 SAMD7Q7Z3H4 446 aa20.18■□□□□ 0.82
CCDC88C-209ENST00000554872 THSD7BQ9C0I4 1608 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 EGFRP00533 1210 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 USP17L8P0C7I0 530 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 KIF4BQ2VIQ3 1234 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 TBC1D10BQ4KMP7 808 aaPredicted RBP20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 ZNF594Q96JF6 807 aaPredicted RBP20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 CNNM1Q9NRU3 951 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 RIPOR2Q9Y4F9 1068 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 MROH5Q6ZUA9 1318 aa20.17■□□□□ 0.82
CCDC88C-209ENST00000554872 TRAF5O00463 557 aa20.16■□□□□ 0.82
CCDC88C-209ENST00000554872 IL1R1P14778 569 aa20.16■□□□□ 0.82
CCDC88C-209ENST00000554872 UBE4AQ14139 1066 aa20.16■□□□□ 0.82
CCDC88C-209ENST00000554872 CST9Q5W186 159 aa20.16■□□□□ 0.82
CCDC88C-209ENST00000554872 CD209Q9NNX6 404 aa20.16■□□□□ 0.82
CCDC88C-209ENST00000554872 TAF5LO75529 589 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 HNRNPUQ00839 825 aaKnown RBP eCLIP20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 INTS3Q68E01 1043 aaKnown RBP20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 ZNF804AQ7Z570 1209 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 HHIPL1Q96JK4 782 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 GLIS2Q9BZE0 524 aaPredicted RBP20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 MKRN1Q9UHC7 482 aaKnown RBP20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 HDAC5Q9UQL6 1122 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 ZBED9Q6R2W3 1325 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 PITPNM2Q9BZ72 1349 aa20.15■□□□□ 0.82
CCDC88C-209ENST00000554872 FKBP1AP62942 108 aaKnown RBP20.14■□□□□ 0.81
CCDC88C-209ENST00000554872 HELBQ8NG08 1087 aaPredicted RBP20.14■□□□□ 0.81
CCDC88C-209ENST00000554872 MYOZ2Q9NPC6 264 aa20.14■□□□□ 0.81
CCDC88C-209ENST00000554872 TLL2Q9Y6L7 1015 aa20.14■□□□□ 0.81
CCDC88C-209ENST00000554872 IPO8O15397 1037 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-209ENST00000554872 TTLL5Q6EMB2 1281 aa20.13■□□□□ 0.81
CCDC88C-209ENST00000554872 VGLL2Q8N8G2 317 aa20.13■□□□□ 0.81
CCDC88C-209ENST00000554872 FBXO3Q9UK99 471 aa20.13■□□□□ 0.81
CCDC88C-209ENST00000554872 SNAP23O00161 211 aa20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 UBTFL1P0CB47 393 aaPredicted RBP20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 VEGFBP49765 207 aa20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 FMR1Q06787 632 aaKnown RBP eCLIP20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 DEFB115Q30KQ5 88 aa20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 KRT26Q7Z3Y9 468 aa20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 OGFOD1Q8N543 542 aa20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 DCPSQ96C86 337 aaKnown RBP20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 PUS3Q9BZE2 481 aaKnown RBP20.12■□□□□ 0.81
CCDC88C-209ENST00000554872 CELF2O95319 508 aaKnown RBP20.11■□□□□ 0.81
CCDC88C-209ENST00000554872 RFX5P48382 616 aaPredicted RBP20.11■□□□□ 0.81
CCDC88C-209ENST00000554872 GGA3Q9NZ52 723 aa20.11■□□□□ 0.81
CCDC88C-209ENST00000554872 ABT1Q9ULW3 272 aaKnown RBP20.11■□□□□ 0.81
CCDC88C-209ENST00000554872 ATF7IPQ6VMQ6 1270 aa20.1■□□□□ 0.81
CCDC88C-209ENST00000554872 SAPCD2Q86UD0 394 aa20.1■□□□□ 0.81
CCDC88C-209ENST00000554872 FAM205AQ6ZU69 1335 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 PDE8BO95263 885 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 TRIM27P14373 513 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 GTF2IP78347 998 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 SCARF1Q14162 830 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 LRRC24Q50LG9 513 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 RBM26Q5T8P6 1007 aaKnown RBP20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 USP48Q86UV5 1035 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 SULF1Q8IWU6 871 aa20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 ZBED3Q96IU2 234 aaPredicted RBP20.09■□□□□ 0.81
CCDC88C-209ENST00000554872 ARAP2Q8WZ64 1704 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 SASH1O94885 1247 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 ECE1P42892 770 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 PTPN12Q05209 780 aaKnown RBP20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 MTMR14Q8NCE2 650 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 TDRD7Q8NHU6 1098 aaKnown RBP20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 MXD3Q9BW11 206 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 HDAC9Q9UKV0 1011 aa20.08■□□□□ 0.81
CCDC88C-209ENST00000554872 WDR33Q9C0J8 1336 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 POLR2AP24928 1970 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 EYA2O00167 538 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 PLIN1O60240 522 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 CIAO1O76071 339 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 GNAI3P08754 354 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 HSPA1AP0DMV8 641 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 HSPA1BP0DMV9 641 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 MTX1Q13505 466 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 METTL24Q5JXM2 366 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 ANGEL2Q5VTE6 544 aaKnown RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 FBXO33Q7Z6M2 555 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 CERS5Q8N5B7 392 aa20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 FAM84BQ96KN1 310 aaPredicted RBP20.07■□□□□ 0.8
CCDC88C-209ENST00000554872 ASTN2O75129 1339 aaPredicted RBP20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 ADM5C9JUS6 153 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 WNT10BO00744 389 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 BCAR3O75815 825 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 FGFR2P21802 821 aa20.06■□□□□ 0.8
CCDC88C-209ENST00000554872 HIBADHP31937 336 aaKnown RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms