RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 ENAMQ9NRM1 1142 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 NRKQ7Z2Y5 1582 aa6.59□□□□□ -1.35
VTI1B-202ENST00000553619 TNS3Q68CZ2 1445 aa6.59□□□□□ -1.36
VTI1B-202ENST00000553619 CNTNAP5Q8WYK1 1306 aa6.58□□□□□ -1.36
VTI1B-202ENST00000553619 PIP4K2BP78356 416 aa6.58□□□□□ -1.36
VTI1B-202ENST00000553619 IRF5Q13568 498 aa6.58□□□□□ -1.36
VTI1B-202ENST00000553619 WASHC4Q2M389 1173 aa6.58□□□□□ -1.36
VTI1B-202ENST00000553619 DDX17Q92841 729 aaKnown RBP6.58□□□□□ -1.36
VTI1B-202ENST00000553619 ZSCAN10Q96SZ4 725 aaPredicted RBP6.58□□□□□ -1.36
VTI1B-202ENST00000553619 USP54Q70EL1 1684 aa6.58□□□□□ -1.36
VTI1B-202ENST00000553619 FLT4P35916 1363 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 USP19O94966 1318 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 MAP3K19Q56UN5 1328 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 ZBTB7CA1YPR0 619 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 FBLN1P23142 703 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 HOXC9P31274 260 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 ABL2P42684 1182 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 PDE3BQ13370 1112 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 ARHGEF25Q86VW2 580 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 NEDD1Q8NHV4 660 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 XAGE2Q96GT9 111 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 DOLKQ9UPQ8 538 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 RTL1A6NKG5 1358 aa6.57□□□□□ -1.36
VTI1B-202ENST00000553619 TRPM3Q9HCF6 1732 aaPredicted RBP6.56□□□□□ -1.36
VTI1B-202ENST00000553619 MAPK8IP3Q9UPT6 1336 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 PIK3C2AO00443 1686 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 PXDNQ92626 1479 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 CDK12Q9NYV4 1490 aaPredicted RBP6.56□□□□□ -1.36
VTI1B-202ENST00000553619 A0A1B0GTH6 734 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 IL13P35225 146 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 C4orf17Q53FE4 359 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 RNF135Q8IUD6 432 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 PHTF2Q8N3S3 785 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 RUBCNLQ9H714 662 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 ETNK1Q9HBU6 452 aa6.56□□□□□ -1.36
VTI1B-202ENST00000553619 SMG6Q86US8 1419 aaKnown RBP6.56□□□□□ -1.36
VTI1B-202ENST00000553619 ALS2Q96Q42 1657 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 ZBED9Q6R2W3 1325 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 NHSL1Q5SYE7 1610 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 PRKCSHP14314 528 aaPredicted RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 ZC3H6P61129 1189 aaKnown RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 UBAP2LQ14157 1087 aaKnown RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 EIF4A2Q14240 407 aaKnown RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 HSP90AB2PQ58FF8 381 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 OXLD1Q5BKU9 147 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 GNASQ5JWF2 1037 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 TMEM214Q6NUQ4 689 aaKnown RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 NSFL1CQ9UNZ2 370 aaKnown RBP6.55□□□□□ -1.36
VTI1B-202ENST00000553619 SLIT3O75094 1523 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 ROBO1Q9Y6N7 1651 aa6.55□□□□□ -1.36
VTI1B-202ENST00000553619 AHDC1Q5TGY3 1603 aaPredicted RBP6.54□□□□□ -1.36
VTI1B-202ENST00000553619 BLMP54132 1417 aaPredicted RBP6.54□□□□□ -1.36
VTI1B-202ENST00000553619 PHF20L1A8MW92 1017 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 APAF1O14727 1248 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 OIP5O43482 229 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 RAD21O60216 631 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 IGHA1P01876 353 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 MSX1P28360 303 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 SOX11P35716 441 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 EVA1CP58658 441 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 FOXK2Q01167 660 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 VAC14Q08AM6 782 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 LMOD3Q0VAK6 560 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 SEMA3FQ13275 785 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 PODNQ7Z5L7 613 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 DCAF5Q96JK2 942 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 CFHR5Q9BXR6 569 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 OXCT2Q9BYC2 517 aaPredicted RBP6.54□□□□□ -1.36
VTI1B-202ENST00000553619 GDPD2Q9HCC8 539 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 PRDM11Q9NQV5 511 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 CPDO75976 1380 aa6.54□□□□□ -1.36
VTI1B-202ENST00000553619 PHLPP1O60346 1717 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 SHISA8B8ZZ34 492 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 ITGB2P05107 769 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 CSB-PGBD3P0DP91 1061 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 MAP2K3P46734 347 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 CALD1Q05682 793 aaKnown RBP6.53□□□□□ -1.36
VTI1B-202ENST00000553619 USP4Q13107 963 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 TLR1Q15399 786 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 CCDC27Q2M243 656 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 PLA2G4EQ3MJ16 856 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 SULT6B1Q6IMI4 303 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 WDR63Q8IWG1 891 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 TCP11L2Q8N4U5 519 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 BEND7Q8N7W2 519 aaPredicted RBP6.53□□□□□ -1.36
VTI1B-202ENST00000553619 ANKRD24Q8TF21 1146 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 LTV1Q96GA3 475 aaPredicted RBP6.53□□□□□ -1.36
VTI1B-202ENST00000553619 LRRC4BQ9NT99 713 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 LTN1O94822 1766 aa6.53□□□□□ -1.36
VTI1B-202ENST00000553619 HTATSF1O43719 755 aaKnown RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 HMOX1P09601 288 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 PRKAR2BP31323 418 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 TMPOP42166 694 aaKnown RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 RIPK4P57078 832 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 SNRPNP63162 240 aaKnown RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 MCM6Q14566 821 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 AMOTQ4VCS5 1084 aa6.52□□□□□ -1.37
VTI1B-202ENST00000553619 PLEKHO1Q53GL0 409 aaPredicted RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 C1orf229Q6ZS94 237 aaPredicted RBP6.52□□□□□ -1.37
VTI1B-202ENST00000553619 CCDC146Q8IYE0 955 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms