RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 CCDC191Q8NCU4 936 aa15.22■□□□□ 0.03
SRP54-203ENST00000553544 ZNF609O15014 1411 aa15.21■□□□□ 0.03
SRP54-203ENST00000553544 FKTNO75072 461 aa15.21■□□□□ 0.03
SRP54-203ENST00000553544 MMP14P50281 582 aa15.21■□□□□ 0.03
SRP54-203ENST00000553544 PCCAP05165 728 aaPredicted RBP15.2■□□□□ 0.02
SRP54-203ENST00000553544 MKRN3Q13064 507 aaKnown RBP15.2■□□□□ 0.02
SRP54-203ENST00000553544 ARMC9Q7Z3E5 817 aa15.2■□□□□ 0.02
SRP54-203ENST00000553544 WWC1Q8IX03 1113 aa15.2■□□□□ 0.02
SRP54-203ENST00000553544 CCDC85AQ96PX6 553 aaPredicted RBP15.2■□□□□ 0.02
SRP54-203ENST00000553544 MYD88Q99836 296 aa15.2■□□□□ 0.02
SRP54-203ENST00000553544 CFHR5Q9BXR6 569 aa15.2■□□□□ 0.02
SRP54-203ENST00000553544 WNT10BO00744 389 aa15.19■□□□□ 0.02
SRP54-203ENST00000553544 ALDH1A1P00352 501 aa15.19■□□□□ 0.02
SRP54-203ENST00000553544 PTPN12Q05209 780 aaKnown RBP15.19■□□□□ 0.02
SRP54-203ENST00000553544 C8orf58Q8NAV2 365 aa15.19■□□□□ 0.02
SRP54-203ENST00000553544 CWC25Q9NXE8 425 aaPredicted RBP15.19■□□□□ 0.02
SRP54-203ENST00000553544 CACNA1FO60840 1977 aa15.18■□□□□ 0.02
SRP54-203ENST00000553544 INHBEP58166 350 aa15.18■□□□□ 0.02
SRP54-203ENST00000553544 DACT2Q5SW24 774 aa15.18■□□□□ 0.02
SRP54-203ENST00000553544 STRIP1Q5VSL9 837 aa15.18■□□□□ 0.02
SRP54-203ENST00000553544 JARID2Q92833 1246 aaPredicted RBP15.18■□□□□ 0.02
SRP54-203ENST00000553544 FBXW7Q969H0 707 aa15.18■□□□□ 0.02
SRP54-203ENST00000553544 CDC5LQ99459 802 aaKnown RBP15.18■□□□□ 0.02
SRP54-203ENST00000553544 PHAXQ9H814 394 aaKnown RBP15.18■□□□□ 0.02
SRP54-203ENST00000553544 MYO3BQ8WXR4 1341 aa15.17■□□□□ 0.02
SRP54-203ENST00000553544 DDX60Q8IY21 1712 aaKnown RBP15.17■□□□□ 0.02
SRP54-203ENST00000553544 SCN9AQ15858 1988 aa15.17■□□□□ 0.02
SRP54-203ENST00000553544 PAPPA2Q9BXP8 1791 aa15.17■□□□□ 0.02
SRP54-203ENST00000553544 ELL2O00472 640 aaPredicted RBP15.17■□□□□ 0.02
SRP54-203ENST00000553544 INTS3Q68E01 1043 aaKnown RBP15.17■□□□□ 0.02
SRP54-203ENST00000553544 R3HDMLQ9H3Y0 253 aa15.17■□□□□ 0.02
SRP54-203ENST00000553544 BSDC1Q9NW68 430 aaPredicted RBP15.17■□□□□ 0.02
SRP54-203ENST00000553544 MINPP1Q9UNW1 487 aa15.17■□□□□ 0.02
SRP54-203ENST00000553544 WTIPA6NIX2 430 aaPredicted RBP15.16■□□□□ 0.02
SRP54-203ENST00000553544 DDX58O95786 925 aaKnown RBP15.16■□□□□ 0.02
SRP54-203ENST00000553544 PRKG1Q13976 671 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 LDLRAD1Q5T700 205 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 SPRYD7Q5W111 196 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 TSPYL6Q8N831 410 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 SLC10A4Q96EP9 437 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 MXD3Q9BW11 206 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 CHMP4AQ9BY43 222 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 COA1Q9GZY4 146 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 IL16Q14005 1332 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 COL4A1P02462 1669 aa15.16■□□□□ 0.02
SRP54-203ENST00000553544 CCT4P50991 539 aaKnown RBP15.15■□□□□ 0.02
SRP54-203ENST00000553544 TTLL5Q6EMB2 1281 aa15.15■□□□□ 0.02
SRP54-203ENST00000553544 APOBEC3FQ8IUX4 373 aaKnown RBP15.15■□□□□ 0.02
SRP54-203ENST00000553544 TSR2Q969E8 191 aaKnown RBP15.15■□□□□ 0.02
SRP54-203ENST00000553544 METTL22Q9BUU2 404 aaPredicted RBP15.15■□□□□ 0.02
SRP54-203ENST00000553544 MANSC4A6NHS7 340 aaPredicted RBP15.14■□□□□ 0.01
SRP54-203ENST00000553544 TTLL11Q8NHH1 800 aa15.14■□□□□ 0.01
SRP54-203ENST00000553544 ANGEL1Q9UNK9 670 aaKnown RBP15.14■□□□□ 0.01
SRP54-203ENST00000553544 LEMD3Q9Y2U8 911 aa15.14■□□□□ 0.01
SRP54-203ENST00000553544 TRIM17Q9Y577 477 aa15.14■□□□□ 0.01
SRP54-203ENST00000553544 MED23Q9ULK4 1368 aa15.13■□□□□ 0.01
SRP54-203ENST00000553544 SASH1O94885 1247 aa15.13■□□□□ 0.01
SRP54-203ENST00000553544 HABP4Q5JVS0 413 aaKnown RBP15.13■□□□□ 0.01
SRP54-203ENST00000553544 IFNL1Q8IU54 200 aa15.13■□□□□ 0.01
SRP54-203ENST00000553544 WDR63Q8IWG1 891 aa15.13■□□□□ 0.01
SRP54-203ENST00000553544 PPP1R12BO60237 982 aaPredicted RBP15.12■□□□□ 0.01
SRP54-203ENST00000553544 CTSWP56202 376 aa15.12■□□□□ 0.01
SRP54-203ENST00000553544 CCDC30Q5VVM6 783 aa15.12■□□□□ 0.01
SRP54-203ENST00000553544 OTUD7BQ6GQQ9 843 aa15.12■□□□□ 0.01
SRP54-203ENST00000553544 KIAA0825Q8IV33 1275 aa15.12■□□□□ 0.01
SRP54-203ENST00000553544 DEFB129Q9H1M3 183 aa15.12■□□□□ 0.01
SRP54-203ENST00000553544 UNCXA6NJT0 531 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 ZBTB48P10074 688 aaPredicted RBP15.11■□□□□ 0.01
SRP54-203ENST00000553544 IGHMBP2P38935 993 aaKnown RBP15.11■□□□□ 0.01
SRP54-203ENST00000553544 OTOP1Q7RTM1 612 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 TXNRD3Q86VQ6 643 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 ANKRD2Q9GZV1 360 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 GREM2Q9H772 168 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.11■□□□□ 0.01
SRP54-203ENST00000553544 MAP3K2Q9Y2U5 619 aa15.11■□□□□ 0.01
SRP54-203ENST00000553544 GTF2IP78347 998 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 NEXNQ0ZGT2 675 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 DLGAP5Q15398 846 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 MAP3K11Q16584 847 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 KSR2Q6VAB6 950 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 FAM9BQ8IZU0 186 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 ERO1AQ96HE7 468 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 ZBED3Q96IU2 234 aaPredicted RBP15.1■□□□□ 0.01
SRP54-203ENST00000553544 PTPN22Q9Y2R2 807 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 ZNF804BA4D1E1 1349 aa15.1■□□□□ 0.01
SRP54-203ENST00000553544 MYH3P11055 1940 aa15.09■□□□□ 0.01
SRP54-203ENST00000553544 POTEFA5A3E0 1075 aa15.09■□□□□ 0.01
SRP54-203ENST00000553544 TWISTNBQ3B726 338 aaPredicted RBP15.09■□□□□ 0.01
SRP54-203ENST00000553544 SUPT20HL1Q3ZLR7 823 aa15.09■□□□□ 0.01
SRP54-203ENST00000553544 SALL2Q9Y467 1007 aaPredicted RBP15.09■□□□□ 0.01
SRP54-203ENST00000553544 FANCIQ9NVI1 1328 aa15.09■□□□□ 0.01
SRP54-203ENST00000553544 MKI67P46013 3256 aaKnown RBP15.08■□□□□ 0
SRP54-203ENST00000553544 PI4KAP2A4QPH2 592 aa15.08■□□□□ 0
SRP54-203ENST00000553544 IGKV5-2P06315 115 aa15.08■□□□□ 0
SRP54-203ENST00000553544 PI4KAP1Q8N8J0 262 aa15.08■□□□□ 0
SRP54-203ENST00000553544 WNK4Q96J92 1243 aa15.08■□□□□ 0
SRP54-203ENST00000553544 MPHOSPH8Q99549 860 aa15.08■□□□□ 0
SRP54-203ENST00000553544 FZD1Q9UP38 647 aa15.08■□□□□ 0
SRP54-203ENST00000553544 PPP2R3BQ9Y5P8 575 aa15.08■□□□□ 0
SRP54-203ENST00000553544 H7C1W4 665 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms