RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	ISM2	Q6H9L7	571 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	DHX32	Q7L7V1	743 aa	Known RBP	13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	RAB11FIP4	Q86YS3	637 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	SELENOO	Q9BVL4	669 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	NYX	Q9GZU5	481 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	C6orf50	Q9HD87	102 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	PLCG2	P16885	1265 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	MAATS1	Q7Z4T9	603 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	ARFGAP3	Q9NP61	516 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	TYRO3	Q06418	890 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	RUFY3	Q7L099	469 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	PLEKHM2	Q8IWE5	1019 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	AOPEP	Q8N6M6	819 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	UTP14A	Q9BVJ6	771 aa	Known RBP	13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	BICDL2	A1A5D9	508 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	TACC1	O75410	805 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	PRPF4B	Q13523	1007 aa	Known RBP	13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	TTC12	Q9H892	705 aa	Predicted RBP	13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	ASXL2	Q76L83	1435 aa		13.14	□□□□□ -0.31
SYNE2-208	ENST00000553289	AFM	P43652	599 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	AK2	P54819	239 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	RNF187	Q5TA31	235 aa	Predicted RBP	13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	SETDB2	Q96T68	719 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	WDR7	Q9Y4E6	1490 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	TUBB	P07437	444 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	ACTN2	P35609	894 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	CHRNA2	Q15822	529 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	TMX1	Q9H3N1	280 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	AOX1	Q06278	1338 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	INSR	P06213	1382 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	MAGEB6P1	A0A0J9YX57	407 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	KRT13	P13646	458 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	CHML	P26374	656 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	ZNF804A	Q7Z570	1209 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	CCDC155	Q8N6L0	562 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	LMBR1	Q8WVP7	490 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	LRRC2	Q9BYS8	371 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	DNAJC25	Q9H1X3	360 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	SAMM50	Q9Y512	469 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	CFAP43	Q8NDM7	1665 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	HELLS	Q9NRZ9	838 aa		13.13	□□□□□ -0.31
SYNE2-208	ENST00000553289	SYT1	P21579	422 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	DCAF5	Q96JK2	942 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	COL17A1	Q9UMD9	1497 aa	Predicted RBP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	JARID2	Q92833	1246 aa	Predicted RBP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	RASAL2	Q9UJF2	1139 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	HOXB7	P09629	217 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	NF2	P35240	595 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	KRT2	P35908	639 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	HEATR3	Q7Z4Q2	680 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	DNAI1	Q9UI46	699 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	KRT86	O43790	486 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	SLU7	O95391	586 aa	Known RBP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	NAPA	P54920	295 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	TCEANC2	Q96MN5	208 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	USP26	Q9BXU7	913 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	PPP1R2	P41236	205 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	ASIC1	P78348	528 aa		13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	RBM28	Q9NW13	759 aa	Known RBP	13.12	□□□□□ -0.31
SYNE2-208	ENST00000553289	FBLN1	P23142	703 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	NAP1L4	Q99733	375 aa	Known RBP	13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	CTAGE9	A4FU28	777 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	FMNL3	Q8IVF7	1028 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	HDAC9	Q9UKV0	1011 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	OPA1	O60313	960 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	RLBP1	P12271	317 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	SLC39A6	Q13433	755 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289		A0A1W2PP64	1363 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	PTPDC1	A2A3K4	754 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	IL2RB	P14784	551 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	ATP6V1A	P38606	617 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	LMAN1	P49257	510 aa		13.11	□□□□□ -0.31
SYNE2-208	ENST00000553289	MARCKS	P29966	332 aa	Predicted RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	GNA11	P29992	359 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	KRT79	Q5XKE5	535 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	STMN4	Q9H169	189 aa	Predicted RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	IVL	P07476	585 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	PRIM1	P49642	420 aa	Known RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	RRP36	Q96EU6	259 aa	Known RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	PA2G4	Q9UQ80	394 aa	Known RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	KIF5A	Q12840	1032 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	TSPYL6	Q8N831	410 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	GOLGA1	Q92805	767 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	ANKRD2	Q9GZV1	360 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	KIAA0556	O60303	1618 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	WDR78	Q5VTH9	848 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	BICD1	Q96G01	975 aa		13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	NSRP1	Q9H0G5	558 aa	Known RBP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
SYNE2-208	ENST00000553289	DHX58	Q96C10	678 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	IKBKG	Q9Y6K9	419 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	PPFIA3	O75145	1194 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	LIG1	P18858	919 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	UBE4A	Q14139	1066 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	PRDM10	Q9NQV6	1147 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	WDR62	O43379	1518 aa		13.09	□□□□□ -0.31
SYNE2-208	ENST00000553289	ZBTB7B	O15156	539 aa	Predicted RBP	13.09	□□□□□ -0.31

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