RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 PLIN1O60240 522 aa23.58■■□□□ 1.37
HDAC4-217ENST00000553145 RPS12P25398 132 aaKnown RBP23.58■■□□□ 1.37
HDAC4-217ENST00000553145 HIRAP54198 1017 aaPredicted RBP23.58■■□□□ 1.37
HDAC4-217ENST00000553145 CNTROBQ8N137 903 aa23.58■■□□□ 1.37
HDAC4-217ENST00000553145 KLHDC4Q8TBB5 520 aa23.58■■□□□ 1.37
HDAC4-217ENST00000553145 COA1Q9GZY4 146 aa23.58■■□□□ 1.37
HDAC4-217ENST00000553145 ZNF609O15014 1411 aa23.58■■□□□ 1.36
HDAC4-217ENST00000553145 DNAJC5GQ8N7S2 189 aa23.57■■□□□ 1.36
HDAC4-217ENST00000553145 RIPOR2Q9Y4F9 1068 aa23.57■■□□□ 1.36
HDAC4-217ENST00000553145 USP17L3A6NCW0 530 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 USP17L4A6NCW7 530 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 EGFRP00533 1210 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 RFX5P48382 616 aaPredicted RBP23.56■■□□□ 1.36
HDAC4-217ENST00000553145 LRRC24Q50LG9 513 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 RSBN1LQ6PCB5 846 aaPredicted RBP23.56■■□□□ 1.36
HDAC4-217ENST00000553145 C15orf52Q6ZUT6 534 aaKnown RBP23.56■■□□□ 1.36
HDAC4-217ENST00000553145 USP17L1Q7RTZ2 530 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 SAMD7Q7Z3H4 446 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 CLUAP1Q96AJ1 413 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 CEP350Q5VT06 3117 aa23.56■■□□□ 1.36
HDAC4-217ENST00000553145 H7C1D1 291 aa23.55■■□□□ 1.36
HDAC4-217ENST00000553145 GMLQ99445 158 aa23.55■■□□□ 1.36
HDAC4-217ENST00000553145 LRRFIP2Q9Y608 721 aaKnown RBP23.55■■□□□ 1.36
HDAC4-217ENST00000553145 TBC1D10BQ4KMP7 808 aaPredicted RBP23.54■■□□□ 1.36
HDAC4-217ENST00000553145 DACT2Q5SW24 774 aa23.54■■□□□ 1.36
HDAC4-217ENST00000553145 ZKSCAN2Q63HK3 967 aa23.54■■□□□ 1.36
HDAC4-217ENST00000553145 MXD3Q9BW11 206 aa23.54■■□□□ 1.36
HDAC4-217ENST00000553145 FMR1Q06787 632 aaKnown RBP eCLIP23.53■■□□□ 1.36
HDAC4-217ENST00000553145 AGBL3Q8NEM8 1001 aa23.53■■□□□ 1.36
HDAC4-217ENST00000553145 CD209Q9NNX6 404 aa23.53■■□□□ 1.36
HDAC4-217ENST00000553145 PTPN12Q05209 780 aaKnown RBP23.52■■□□□ 1.36
HDAC4-217ENST00000553145 FBXW7Q969H0 707 aa23.52■■□□□ 1.36
HDAC4-217ENST00000553145 PGAP2Q9UHJ9 254 aa23.52■■□□□ 1.36
HDAC4-217ENST00000553145 MROH5Q6ZUA9 1318 aa23.52■■□□□ 1.36
HDAC4-217ENST00000553145 RBM26Q5T8P6 1007 aaKnown RBP23.51■■□□□ 1.35
HDAC4-217ENST00000553145 STRIP1Q5VSL9 837 aa23.51■■□□□ 1.35
HDAC4-217ENST00000553145 TMEM57Q8N5G2 664 aa23.51■■□□□ 1.35
HDAC4-217ENST00000553145 VGLL2Q8N8G2 317 aa23.51■■□□□ 1.35
HDAC4-217ENST00000553145 TRAF5O00463 557 aa23.5■■□□□ 1.35
HDAC4-217ENST00000553145 ZNF280AP59817 542 aaPredicted RBP23.5■■□□□ 1.35
HDAC4-217ENST00000553145 UBE4AQ14139 1066 aa23.5■■□□□ 1.35
HDAC4-217ENST00000553145 METTL24Q5JXM2 366 aa23.5■■□□□ 1.35
HDAC4-217ENST00000553145 ZC3H15Q8WU90 426 aaKnown RBP23.5■■□□□ 1.35
HDAC4-217ENST00000553145 CREBZFQ9NS37 354 aa23.5■■□□□ 1.35
HDAC4-217ENST00000553145 GNAI3P08754 354 aa23.49■■□□□ 1.35
HDAC4-217ENST00000553145 GTF2IP78347 998 aa23.49■■□□□ 1.35
HDAC4-217ENST00000553145 KIF4BQ2VIQ3 1234 aa23.49■■□□□ 1.35
HDAC4-217ENST00000553145 ZNF804AQ7Z570 1209 aa23.49■■□□□ 1.35
HDAC4-217ENST00000553145 KLRG1Q96E93 195 aa23.49■■□□□ 1.35
HDAC4-217ENST00000553145 EYA2O00167 538 aa23.48■■□□□ 1.35
HDAC4-217ENST00000553145 IL1R1P14778 569 aa23.48■■□□□ 1.35
HDAC4-217ENST00000553145 TTLL5Q6EMB2 1281 aa23.48■■□□□ 1.35
HDAC4-217ENST00000553145 GLIS2Q9BZE0 524 aaPredicted RBP23.48■■□□□ 1.35
HDAC4-217ENST00000553145 HDAC5Q9UQL6 1122 aa23.48■■□□□ 1.35
HDAC4-217ENST00000553145 PDE8BO95263 885 aa23.47■■□□□ 1.35
HDAC4-217ENST00000553145 USP17L8P0C7I0 530 aa23.47■■□□□ 1.35
HDAC4-217ENST00000553145 RLBP1P12271 317 aa23.47■■□□□ 1.35
HDAC4-217ENST00000553145 GYG1P46976 350 aa23.47■■□□□ 1.35
HDAC4-217ENST00000553145 ATG9AQ7Z3C6 839 aa23.47■■□□□ 1.35
HDAC4-217ENST00000553145 ASTN2O75129 1339 aaPredicted RBP23.47■■□□□ 1.35
HDAC4-217ENST00000553145 TMEM88BA6NKF7 163 aa23.46■■□□□ 1.35
HDAC4-217ENST00000553145 MYO3BQ8WXR4 1341 aa23.46■■□□□ 1.35
HDAC4-217ENST00000553145 FAM84BQ96KN1 310 aaPredicted RBP23.46■■□□□ 1.35
HDAC4-217ENST00000553145 SIL1Q9H173 461 aa23.46■■□□□ 1.35
HDAC4-217ENST00000553145 PA2G4Q9UQ80 394 aaKnown RBP23.46■■□□□ 1.35
HDAC4-217ENST00000553145 DZIP1LQ8IYY4 767 aaKnown RBP23.45■■□□□ 1.34
HDAC4-217ENST00000553145 CERS5Q8N5B7 392 aa23.45■■□□□ 1.34
HDAC4-217ENST00000553145 MYOZ2Q9NPC6 264 aa23.45■■□□□ 1.34
HDAC4-217ENST00000553145 MTX1Q13505 466 aa23.44■■□□□ 1.34
HDAC4-217ENST00000553145 DLK2Q6UY11 383 aa23.44■■□□□ 1.34
HDAC4-217ENST00000553145 JAG2Q9Y219 1238 aa23.44■■□□□ 1.34
HDAC4-217ENST00000553145 TRPM7Q96QT4 1865 aa23.44■■□□□ 1.34
HDAC4-217ENST00000553145 FGFR2P21802 821 aa23.43■■□□□ 1.34
HDAC4-217ENST00000553145 HIBADHP31937 336 aaKnown RBP23.43■■□□□ 1.34
HDAC4-217ENST00000553145 CST9Q5W186 159 aa23.43■■□□□ 1.34
HDAC4-217ENST00000553145 CDC37L1Q7L3B6 337 aa23.43■■□□□ 1.34
HDAC4-217ENST00000553145 KIAA0825Q8IV33 1275 aa23.43■■□□□ 1.34
HDAC4-217ENST00000553145 FTSJ3Q8IY81 847 aaKnown RBP23.43■■□□□ 1.34
HDAC4-217ENST00000553145 TDRD7Q8NHU6 1098 aaKnown RBP23.43■■□□□ 1.34
HDAC4-217ENST00000553145 GGA3Q9NZ52 723 aa23.43■■□□□ 1.34
HDAC4-217ENST00000553145 MKRN1Q9UHC7 482 aaKnown RBP23.43■■□□□ 1.34
HDAC4-217ENST00000553145 CIAO1O76071 339 aa23.42■■□□□ 1.34
HDAC4-217ENST00000553145 GNAI2P04899 355 aa23.42■■□□□ 1.34
HDAC4-217ENST00000553145 USP48Q86UV5 1035 aa23.42■■□□□ 1.34
HDAC4-217ENST00000553145 COPRSQ9NQ92 184 aa23.42■■□□□ 1.34
HDAC4-217ENST00000553145 FBXO3Q9UK99 471 aa23.42■■□□□ 1.34
HDAC4-217ENST00000553145 ADM5C9JUS6 153 aa23.41■■□□□ 1.34
HDAC4-217ENST00000553145 SRGAP3O43295 1099 aa23.41■■□□□ 1.34
HDAC4-217ENST00000553145 SCARF1Q14162 830 aa23.41■■□□□ 1.34
HDAC4-217ENST00000553145 PUM3Q15397 648 aaKnown RBP23.41■■□□□ 1.34
HDAC4-217ENST00000553145 FBXO33Q7Z6M2 555 aa23.41■■□□□ 1.34
HDAC4-217ENST00000553145 ITPRIPQ8IWB1 547 aa23.41■■□□□ 1.34
HDAC4-217ENST00000553145 CNTNAP1P78357 1384 aa23.4■■□□□ 1.34
HDAC4-217ENST00000553145 POLR2AP24928 1970 aaKnown RBP23.4■■□□□ 1.34
HDAC4-217ENST00000553145 SASH1O94885 1247 aa23.4■■□□□ 1.34
HDAC4-217ENST00000553145 KRT26Q7Z3Y9 468 aa23.4■■□□□ 1.34
HDAC4-217ENST00000553145 JMYQ8N9B5 988 aa23.4■■□□□ 1.34
HDAC4-217ENST00000553145 DCPSQ96C86 337 aaKnown RBP23.4■■□□□ 1.34
HDAC4-217ENST00000553145 IQSEC3Q9UPP2 1182 aaPredicted RBP23.4■■□□□ 1.34
HDAC4-217ENST00000553145 FAM205AQ6ZU69 1335 aa23.39■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms