RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 NOGQ13253 232 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 TNIP1Q15025 636 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 SLC10A5Q5PT55 438 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 USP48Q86UV5 1035 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 SP8Q8IXZ3 490 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 MPNDQ8N594 471 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 DDX27Q96GQ7 796 aaKnown RBP13.88□□□□□ -0.19
VPS29-208ENST00000550267 LARP6Q9BRS8 491 aaKnown RBP13.88□□□□□ -0.19
VPS29-208ENST00000550267 THUMPD2Q9BTF0 503 aaKnown RBP13.88□□□□□ -0.19
VPS29-208ENST00000550267 ZBED2Q9BTP6 218 aa13.88□□□□□ -0.19
VPS29-208ENST00000550267 UTP14AQ9BVJ6 771 aaKnown RBP13.88□□□□□ -0.19
VPS29-208ENST00000550267 CNOT7Q9UIV1 285 aaKnown RBP13.88□□□□□ -0.19
VPS29-208ENST00000550267 ZDHHC16Q969W1 377 aa13.87□□□□□ -0.19
VPS29-208ENST00000550267 CASP8AP2Q9UKL3 1982 aa13.87□□□□□ -0.19
VPS29-208ENST00000550267 YDJCA8MPS7 323 aa13.86□□□□□ -0.19
VPS29-208ENST00000550267 BBOX1O75936 387 aa13.86□□□□□ -0.19
VPS29-208ENST00000550267 MFSD10Q14728 455 aa13.86□□□□□ -0.19
VPS29-208ENST00000550267 ERBB4Q15303 1308 aa13.86□□□□□ -0.19
VPS29-208ENST00000550267 H7C1D1 291 aa13.85□□□□□ -0.19
VPS29-208ENST00000550267 HCLS1P14317 486 aaPredicted RBP13.85□□□□□ -0.19
VPS29-208ENST00000550267 PTPN5P54829 565 aa13.85□□□□□ -0.19
VPS29-208ENST00000550267 SOX10P56693 466 aa13.85□□□□□ -0.19
VPS29-208ENST00000550267 SAMD7Q7Z3H4 446 aa13.85□□□□□ -0.19
VPS29-208ENST00000550267 LRP10Q7Z4F1 713 aa13.85□□□□□ -0.19
VPS29-208ENST00000550267 DUOX1Q9NRD9 1551 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 FAM155AB1AL88 458 aaPredicted RBP13.84□□□□□ -0.19
VPS29-208ENST00000550267 ANXA1P04083 346 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 NEFMP07197 916 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 KIF23Q02241 960 aaPredicted RBP13.84□□□□□ -0.19
VPS29-208ENST00000550267 GRAPQ13588 217 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 PDIA6Q15084 440 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 PROSER3Q2NL68 480 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 RGMBQ6NW40 437 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 DDX46Q7L014 1031 aaKnown RBP13.84□□□□□ -0.19
VPS29-208ENST00000550267 GRAPLQ8TC17 118 aaPredicted RBP13.84□□□□□ -0.19
VPS29-208ENST00000550267 DLG5Q8TDM6 1919 aa13.84□□□□□ -0.19
VPS29-208ENST00000550267 LAMB2P55268 1798 aa13.83□□□□□ -0.19
VPS29-208ENST00000550267 ADM5C9JUS6 153 aa13.83□□□□□ -0.2
VPS29-208ENST00000550267 EGFRP00533 1210 aa13.83□□□□□ -0.2
VPS29-208ENST00000550267 EIF2S2P20042 333 aaKnown RBP13.83□□□□□ -0.2
VPS29-208ENST00000550267 MAP3K9P80192 1104 aa13.83□□□□□ -0.2
VPS29-208ENST00000550267 TBC1D10BQ4KMP7 808 aaPredicted RBP13.83□□□□□ -0.2
VPS29-208ENST00000550267 NLRP10Q86W26 655 aa13.83□□□□□ -0.2
VPS29-208ENST00000550267 ADAM33Q9BZ11 813 aa13.83□□□□□ -0.2
VPS29-208ENST00000550267 GBA2Q9HCG7 927 aaPredicted RBP13.83□□□□□ -0.2
VPS29-208ENST00000550267 PSMD14O00487 310 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 TRPA1O75762 1119 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 NFE2L2Q16236 605 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 KRT26Q7Z3Y9 468 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 C2orf69Q8N8R5 385 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 DPF2Q92785 391 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 PLEKHF1Q96S99 279 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 RNF186Q9NXI6 227 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 SAGE1Q9NXZ1 904 aa13.82□□□□□ -0.2
VPS29-208ENST00000550267 TNRC18O15417 2968 aaPredicted RBP13.81□□□□□ -0.2
VPS29-208ENST00000550267 ZNF157P51786 506 aaPredicted RBP13.81□□□□□ -0.2
VPS29-208ENST00000550267 RBM26Q5T8P6 1007 aaKnown RBP13.81□□□□□ -0.2
VPS29-208ENST00000550267 THSD4Q6ZMP0 1018 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 CCDC102AQ96A19 550 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 ZNF428Q96B54 188 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 DBNDD1Q9H9R9 158 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 TRMT112Q9UI30 125 aaKnown RBP13.81□□□□□ -0.2
VPS29-208ENST00000550267 TSPYL4Q9UJ04 414 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 ANKRD36CQ5JPF3 1778 aa13.81□□□□□ -0.2
VPS29-208ENST00000550267 AIMP1Q12904 312 aaKnown RBP13.8□□□□□ -0.2
VPS29-208ENST00000550267 WASHC4Q2M389 1173 aa13.8□□□□□ -0.2
VPS29-208ENST00000550267 HSP90AB3PQ58FF7 597 aa13.8□□□□□ -0.2
VPS29-208ENST00000550267 COPS6Q7L5N1 327 aa13.8□□□□□ -0.2
VPS29-208ENST00000550267 MRPL50Q8N5N7 158 aaKnown RBP13.8□□□□□ -0.2
VPS29-208ENST00000550267 NECTIN2Q92692 538 aa13.8□□□□□ -0.2
VPS29-208ENST00000550267 DCPSQ96C86 337 aaKnown RBP13.8□□□□□ -0.2
VPS29-208ENST00000550267 KCNQ5Q9NR82 932 aa13.8□□□□□ -0.2
VPS29-208ENST00000550267 LRRC37AA6NMS7 1700 aa13.79□□□□□ -0.2
VPS29-208ENST00000550267 GOLGA8CPA6NN73 597 aa13.79□□□□□ -0.2
VPS29-208ENST00000550267 TMC4Q7Z404 712 aa13.79□□□□□ -0.2
VPS29-208ENST00000550267 XAGE3Q8WTP9 111 aa13.79□□□□□ -0.2
VPS29-208ENST00000550267 NSFL1CQ9UNZ2 370 aaKnown RBP13.79□□□□□ -0.2
VPS29-208ENST00000550267 SH3TC1Q8TE82 1336 aa13.79□□□□□ -0.2
VPS29-208ENST00000550267 SLC10A3P09131 477 aa13.78□□□□□ -0.2
VPS29-208ENST00000550267 TCIRG1Q13488 830 aa13.78□□□□□ -0.2
VPS29-208ENST00000550267 CELF1Q92879 486 aaKnown RBP13.78□□□□□ -0.2
VPS29-208ENST00000550267 CSRNP1Q96S65 589 aa13.78□□□□□ -0.2
VPS29-208ENST00000550267 RTL9Q8NET4 1388 aa13.78□□□□□ -0.2
VPS29-208ENST00000550267 TAF1P21675 1872 aa13.78□□□□□ -0.2
VPS29-208ENST00000550267 C6orf229H3BNL8 230 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 ECE2O60344 883 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 ASTN2O75129 1339 aaPredicted RBP13.77□□□□□ -0.21
VPS29-208ENST00000550267 COL4A1P02462 1669 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 RPS12P25398 132 aaKnown RBP13.77□□□□□ -0.21
VPS29-208ENST00000550267 GPSM2P81274 684 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 CTU1Q7Z7A3 348 aaKnown RBP13.77□□□□□ -0.21
VPS29-208ENST00000550267 WNT2BQ93097 391 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 NBPF3Q9H094 633 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 EMILIN3Q9NT22 766 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 GGA3Q9NZ52 723 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 POLLQ9UGP5 575 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 MAPK8IP3Q9UPT6 1336 aa13.77□□□□□ -0.21
VPS29-208ENST00000550267 KIF4BQ2VIQ3 1234 aa13.76□□□□□ -0.21
VPS29-208ENST00000550267 PRPF38BQ5VTL8 546 aaKnown RBP13.76□□□□□ -0.21
VPS29-208ENST00000550267 SULF1Q8IWU6 871 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms