RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 F13A1P00488 732 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 NMIQ13287 307 aaPredicted RBP13.13□□□□□ -0.31
LINC00661-204ENST00000549354 CCDC87Q9NVE4 849 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 PYCARDQ9ULZ3 195 aa13.13□□□□□ -0.31
LINC00661-204ENST00000549354 IL15P40933 162 aaPredicted RBP13.12□□□□□ -0.31
LINC00661-204ENST00000549354 ME3Q16798 604 aa13.12□□□□□ -0.31
LINC00661-204ENST00000549354 CDC37L1Q7L3B6 337 aa13.12□□□□□ -0.31
LINC00661-204ENST00000549354 PALLDQ8WX93 1383 aa13.12□□□□□ -0.31
LINC00661-204ENST00000549354 RPAP1Q9BWH6 1393 aaPredicted RBP13.12□□□□□ -0.31
LINC00661-204ENST00000549354 C8orf37Q96NL8 207 aa13.12□□□□□ -0.31
LINC00661-204ENST00000549354 DBNLQ9UJU6 430 aaKnown RBP13.12□□□□□ -0.31
LINC00661-204ENST00000549354 RBM8AQ9Y5S9 174 aaKnown RBP13.12□□□□□ -0.31
LINC00661-204ENST00000549354 RFX7Q2KHR2 1363 aa13.12□□□□□ -0.31
LINC00661-204ENST00000549354 EYA2O00167 538 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 ZKSCAN1P17029 563 aaPredicted RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 ITPK1Q13572 414 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 PTPN21Q16825 1174 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 LSG1Q9H089 658 aaKnown RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 CYP46A1Q9Y6A2 500 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 A0A0D9SFI3 127 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 HIP1O00291 1037 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 FAM98CQ17RN3 349 aaKnown RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 ACSBG1Q96GR2 724 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 V9GYY5 206 aaPredicted RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 RGL2O15211 777 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 CRKLP46109 303 aaKnown RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 UBE2HP62256 183 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 DZIP3Q86Y13 1208 aaKnown RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 AK7Q96M32 723 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 RAD50Q92878 1312 aa13.11□□□□□ -0.31
LINC00661-204ENST00000549354 MYH14Q7Z406 1995 aaKnown RBP13.11□□□□□ -0.31
LINC00661-204ENST00000549354 LIG1P18858 919 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 MCM5P33992 734 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 ATP6V1AP38606 617 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 HAND2P61296 217 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 LRMPQ12912 555 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 ZNF589Q86UQ0 364 aaPredicted RBP13.1□□□□□ -0.31
LINC00661-204ENST00000549354 NHSQ6T4R5 1651 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 OTUD7BQ6GQQ9 843 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 RUFY2Q8WXA3 655 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 KCNB2Q92953 911 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 A0A0G2JLW4 131 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 H3BQV1 296 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 PPP4R3BQ5MIZ7 849 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 IFFO2Q5TF58 517 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 PIBF1Q8WXW3 757 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 NCOA5Q9HCD5 579 aaKnown RBP13.1□□□□□ -0.31
LINC00661-204ENST00000549354 TPCN1Q9ULQ1 816 aa13.1□□□□□ -0.31
LINC00661-204ENST00000549354 BCORQ6W2J9 1755 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 MYH3P11055 1940 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 ZNF609O15014 1411 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 ONECUT3O60422 494 aaPredicted RBP13.09□□□□□ -0.31
LINC00661-204ENST00000549354 PTGS1P23219 599 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 C16orf45Q96MC5 204 aaPredicted RBP13.09□□□□□ -0.31
LINC00661-204ENST00000549354 NRBP1Q9UHY1 535 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 KCNQ2O43526 872 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 ZNF710Q8N1W2 664 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 FAM89AQ96GI7 184 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 DACT1Q9NYF0 836 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 USP21Q9UK80 565 aa13.09□□□□□ -0.31
LINC00661-204ENST00000549354 UBN2Q6ZU65 1347 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 CAMTA2O94983 1202 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 TIMM10P62072 90 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 HSP90AA4PQ58FG1 418 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 HAUS7Q99871 368 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 TRIM5Q9C035 493 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 MTMR6Q9Y217 621 aa13.08□□□□□ -0.31
LINC00661-204ENST00000549354 LRP5O75197 1615 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 FILIP1Q7Z7B0 1213 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 MYRIPQ8NFW9 859 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 TTLL11Q8NHH1 800 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.08□□□□□ -0.32
LINC00661-204ENST00000549354 TTC14Q96N46 770 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 SPEF2Q9C093 1822 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 NAA30Q147X3 362 aaPredicted RBP13.08□□□□□ -0.32
LINC00661-204ENST00000549354 ZNF594Q96JF6 807 aaPredicted RBP13.08□□□□□ -0.32
LINC00661-204ENST00000549354 KIF3AQ9Y496 699 aa13.08□□□□□ -0.32
LINC00661-204ENST00000549354 TERF1P54274 439 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 CCDC57Q2TAC2 916 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 LRRC24Q50LG9 513 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 TTC6Q86TZ1 520 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 DBNDD2Q9BQY9 259 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 KCNF1Q9H3M0 494 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 ATRNO75882 1429 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 LAMB2P55268 1798 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 GJB4Q9NTQ9 266 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 TRMT1Q9NXH9 659 aaKnown RBP13.07□□□□□ -0.32
LINC00661-204ENST00000549354 TBC1D2BQ9UPU7 963 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 CNTNAP4Q9C0A0 1308 aa13.07□□□□□ -0.32
LINC00661-204ENST00000549354 CTSWP56202 376 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 FKBP4Q02790 459 aaKnown RBP eCLIP13.06□□□□□ -0.32
LINC00661-204ENST00000549354 BLOC1S2Q6QNY1 142 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 FAM184AQ8NB25 1140 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 MED23Q9ULK4 1368 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 BIN1O00499 593 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 RIOK3O14730 519 aaKnown RBP13.06□□□□□ -0.32
LINC00661-204ENST00000549354 PDE8AO60658 829 aa13.06□□□□□ -0.32
LINC00661-204ENST00000549354 CREB3L3Q68CJ9 461 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms