RNA–Protein interactions for RNA: ENST00000549131.1

LINC00661-203, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best)

Gene LINC00661, Length 512 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-203ENST00000549131 USP17L3A6NCW0 530 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 USP17L4A6NCW7 530 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 TAF5LO75529 589 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 USP17L1Q7RTZ2 530 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 TXNRD3Q86VQ6 643 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 AGBL3Q8NEM8 1001 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 HELBQ8NG08 1087 aaPredicted RBP18.52■□□□□ 0.56
LINC00661-203ENST00000549131 COA1Q9GZY4 146 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 CNNM1Q9NRU3 951 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 PGAP2Q9UHJ9 254 aa18.52■□□□□ 0.56
LINC00661-203ENST00000549131 LDHAL6AQ6ZMR3 332 aa18.51■□□□□ 0.55
LINC00661-203ENST00000549131 KAZALD1Q96I82 304 aa18.51■□□□□ 0.55
LINC00661-203ENST00000549131 BICC1Q9H694 974 aaKnown RBP18.51■□□□□ 0.55
LINC00661-203ENST00000549131 ZNF408Q9H9D4 720 aa18.51■□□□□ 0.55
LINC00661-203ENST00000549131 ECM29Q5VYK3 1845 aa18.51■□□□□ 0.55
LINC00661-203ENST00000549131 MYH13Q9UKX3 1938 aa18.51■□□□□ 0.55
LINC00661-203ENST00000549131 CELF2O95319 508 aaKnown RBP18.5■□□□□ 0.55
LINC00661-203ENST00000549131 PAXIP1Q6ZW49 1069 aaPredicted RBP18.5■□□□□ 0.55
LINC00661-203ENST00000549131 CDC37L1Q7L3B6 337 aa18.5■□□□□ 0.55
LINC00661-203ENST00000549131 RASSF10A6NK89 507 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 SNAP23O00161 211 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 PLIN1O60240 522 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 USP17L8P0C7I0 530 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 HSPA1AP0DMV8 641 aaKnown RBP18.49■□□□□ 0.55
LINC00661-203ENST00000549131 HSPA1BP0DMV9 641 aaKnown RBP18.49■□□□□ 0.55
LINC00661-203ENST00000549131 VEGFBP49765 207 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 GGA3Q9NZ52 723 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 MYO3BQ8WXR4 1341 aa18.49■□□□□ 0.55
LINC00661-203ENST00000549131 ZNF280AP59817 542 aaPredicted RBP18.48■□□□□ 0.55
LINC00661-203ENST00000549131 HNRNPUQ00839 825 aaKnown RBP eCLIP18.48■□□□□ 0.55
LINC00661-203ENST00000549131 DEFB115Q30KQ5 88 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 DACT2Q5SW24 774 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 CST9Q5W186 159 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 KRT26Q7Z3Y9 468 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 USP48Q86UV5 1035 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 ANKRD44Q8N8A2 993 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 DCPSQ96C86 337 aaKnown RBP18.48■□□□□ 0.55
LINC00661-203ENST00000549131 GMLQ99445 158 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 MXD3Q9BW11 206 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 NOB1Q9ULX3 412 aaKnown RBP18.48■□□□□ 0.55
LINC00661-203ENST00000549131 KIF16BQ96L93 1317 aa18.48■□□□□ 0.55
LINC00661-203ENST00000549131 GRM1Q13255 1194 aa18.47■□□□□ 0.55
LINC00661-203ENST00000549131 RABL6Q3YEC7 729 aaPredicted RBP18.47■□□□□ 0.55
LINC00661-203ENST00000549131 STRIP1Q5VSL9 837 aa18.47■□□□□ 0.55
LINC00661-203ENST00000549131 ZNF804AQ7Z570 1209 aa18.47■□□□□ 0.55
LINC00661-203ENST00000549131 MYOZ2Q9NPC6 264 aa18.47■□□□□ 0.55
LINC00661-203ENST00000549131 ASTN2O75129 1339 aaPredicted RBP18.47■□□□□ 0.55
LINC00661-203ENST00000549131 ADM5C9JUS6 153 aa18.46■□□□□ 0.55
LINC00661-203ENST00000549131 RARSP54136 660 aaKnown RBP18.46■□□□□ 0.55
LINC00661-203ENST00000549131 API5Q9BZZ5 524 aaKnown RBP18.46■□□□□ 0.55
LINC00661-203ENST00000549131 USP44Q9H0E7 712 aa18.46■□□□□ 0.55
LINC00661-203ENST00000549131 TLL2Q9Y6L7 1015 aa18.46■□□□□ 0.55
LINC00661-203ENST00000549131 IRS2Q9Y4H2 1338 aa18.46■□□□□ 0.55
LINC00661-203ENST00000549131 GTF2IP78347 998 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 TTLL5Q6EMB2 1281 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 DLK2Q6UY11 383 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 C15orf52Q6ZUT6 534 aaKnown RBP18.45■□□□□ 0.54
LINC00661-203ENST00000549131 SULF1Q8IWU6 871 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 OGFOD1Q8N543 542 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 PUS3Q9BZE2 481 aaKnown RBP18.45■□□□□ 0.54
LINC00661-203ENST00000549131 CD209Q9NNX6 404 aa18.45■□□□□ 0.54
LINC00661-203ENST00000549131 WDR33Q9C0J8 1336 aaKnown RBP18.45■□□□□ 0.54
LINC00661-203ENST00000549131 SCARF1Q14162 830 aa18.44■□□□□ 0.54
LINC00661-203ENST00000549131 ANGEL2Q5VTE6 544 aaKnown RBP18.44■□□□□ 0.54
LINC00661-203ENST00000549131 CAPNS2Q96L46 248 aa18.44■□□□□ 0.54
LINC00661-203ENST00000549131 MROH5Q6ZUA9 1318 aa18.44■□□□□ 0.54
LINC00661-203ENST00000549131 UBTFL1P0CB47 393 aaPredicted RBP18.43■□□□□ 0.54
LINC00661-203ENST00000549131 BRPF1P55201 1214 aaPredicted RBP18.43■□□□□ 0.54
LINC00661-203ENST00000549131 CYP4F22Q6NT55 531 aa18.43■□□□□ 0.54
LINC00661-203ENST00000549131 KIAA0825Q8IV33 1275 aa18.43■□□□□ 0.54
LINC00661-203ENST00000549131 KLHDC4Q8TBB5 520 aa18.43■□□□□ 0.54
LINC00661-203ENST00000549131 ECE1P42892 770 aa18.42■□□□□ 0.54
LINC00661-203ENST00000549131 SAPCD2Q86UD0 394 aa18.42■□□□□ 0.54
LINC00661-203ENST00000549131 PAPPA2Q9BXP8 1791 aa18.42■□□□□ 0.54
LINC00661-203ENST00000549131 SASH1O94885 1247 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 UBE4AQ14139 1066 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 LRRC24Q50LG9 513 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 METTL24Q5JXM2 366 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 AIDAQ96BJ3 306 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 HDAC9Q9UKV0 1011 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 JAG2Q9Y219 1238 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 RIPOR2Q9Y4F9 1068 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 PITPNM2Q9BZ72 1349 aa18.41■□□□□ 0.54
LINC00661-203ENST00000549131 IL1R1P14778 569 aa18.4■□□□□ 0.54
LINC00661-203ENST00000549131 NBPF9Q3BBW0 867 aa18.4■□□□□ 0.54
LINC00661-203ENST00000549131 CDCA5Q96FF9 252 aa18.4■□□□□ 0.54
LINC00661-203ENST00000549131 GYG1P46976 350 aa18.39■□□□□ 0.53
LINC00661-203ENST00000549131 HUNKP57058 714 aa18.39■□□□□ 0.53
LINC00661-203ENST00000549131 CERS5Q8N5B7 392 aa18.39■□□□□ 0.53
LINC00661-203ENST00000549131 FRAT1Q92837 279 aaPredicted RBP18.39■□□□□ 0.53
LINC00661-203ENST00000549131 GBA2Q9HCG7 927 aaPredicted RBP18.39■□□□□ 0.53
LINC00661-203ENST00000549131 SCAF8Q9UPN6 1271 aaKnown RBP18.39■□□□□ 0.53
LINC00661-203ENST00000549131 F8W031 263 aaPredicted RBP18.38■□□□□ 0.53
LINC00661-203ENST00000549131 WNT10BO00744 389 aa18.38■□□□□ 0.53
LINC00661-203ENST00000549131 FOXN1O15353 648 aa18.38■□□□□ 0.53
LINC00661-203ENST00000549131 ARHGAP45Q92619 1136 aa18.38■□□□□ 0.53
LINC00661-203ENST00000549131 HHIPL1Q96JK4 782 aa18.38■□□□□ 0.53
LINC00661-203ENST00000549131 LRRFIP2Q9Y608 721 aaKnown RBP18.38■□□□□ 0.53
LINC00661-203ENST00000549131 BCAR3O75815 825 aa18.37■□□□□ 0.53
LINC00661-203ENST00000549131 HIBADHP31937 336 aaKnown RBP18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms