RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 EXOSC10Q01780 885 aaKnown RBP10.24□□□□□ -0.77
TDP1-204ENST00000545686 TFCP2Q12800 502 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 FBXL16Q8N461 479 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 MYD88Q99836 296 aa10.24□□□□□ -0.77
TDP1-204ENST00000545686 C4AP0C0L4 1744 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 C4BP0C0L5 1744 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 A0A1W2PQ27 194 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 A0A1W2PQ64 194 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 A0A1W2PQD8 194 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 CTDNEP1O95476 244 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 GCP02774 474 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 TUBB4AP04350 444 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 STOX1Q6ZVD7 989 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 CCAR2Q8N163 923 aaKnown RBP10.23□□□□□ -0.77
TDP1-204ENST00000545686 XAGE3Q8WTP9 111 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 ZNF274Q96GC6 653 aaPredicted RBP10.23□□□□□ -0.77
TDP1-204ENST00000545686 ERO1AQ96HE7 468 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 USP28Q96RU2 1077 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 TMEM94Q12767 1356 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 CCDC129Q6ZRS4 1044 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 FSIP1Q8NA03 581 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 CCDC150Q8NCX0 1101 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 RGS22Q8NE09 1264 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 KIF18AQ8NI77 898 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 MRPS27Q92552 414 aaKnown RBP10.23□□□□□ -0.77
TDP1-204ENST00000545686 SLC52A2Q9HAB3 445 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 GPR108Q9NPR9 543 aa10.23□□□□□ -0.77
TDP1-204ENST00000545686 ECM29Q5VYK3 1845 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 CARMIL3Q8ND23 1372 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 TAF3Q5VWG9 929 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 LRP10Q7Z4F1 713 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 FMR1NBQ8N0W7 255 aaPredicted RBP10.22□□□□□ -0.77
TDP1-204ENST00000545686 DNAJC2Q99543 621 aaKnown RBP10.22□□□□□ -0.77
TDP1-204ENST00000545686 DBNDD2Q9BQY9 259 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 RTEL1Q9NZ71 1219 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 UBR2Q8IWV8 1755 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 EVCP57679 992 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 FAM193AP78312 1265 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 ADALQ6DHV7 355 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 ANKRD13DQ6ZTN6 518 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 COPS6Q7L5N1 327 aa10.22□□□□□ -0.77
TDP1-204ENST00000545686 COL18A1P39060 1754 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 USP27XA6NNY8 438 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 ME1P48163 572 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 CEBPZQ03701 1054 aaKnown RBP10.21□□□□□ -0.77
TDP1-204ENST00000545686 ESCO1Q5FWF5 840 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 ZMYM1Q5SVZ6 1142 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 DDX46Q7L014 1031 aaKnown RBP10.21□□□□□ -0.77
TDP1-204ENST00000545686 SEC62Q99442 399 aaKnown RBP10.21□□□□□ -0.77
TDP1-204ENST00000545686 USP16Q9Y5T5 823 aa10.21□□□□□ -0.77
TDP1-204ENST00000545686 PSDA5PKW4 1024 aaPredicted RBP10.21□□□□□ -0.78
TDP1-204ENST00000545686 YEATS4O95619 227 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 MYL6BP14649 208 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 APOBRQ0VD83 1088 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 ILDR1Q86SU0 546 aaPredicted RBP10.21□□□□□ -0.78
TDP1-204ENST00000545686 KRT222Q8N1A0 295 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 AOPEPQ8N6M6 819 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 KCNG4Q8TDN1 519 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 ZNF592Q92610 1267 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 PAG1Q9NWQ8 432 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 FAM53CQ9NYF3 392 aa10.21□□□□□ -0.78
TDP1-204ENST00000545686 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.21□□□□□ -0.784e-6■■■□□ 19.2
TDP1-204ENST00000545686 ZNF215Q9UL58 517 aaPredicted RBP10.21□□□□□ -0.78
TDP1-204ENST00000545686 ADAMTSL3P82987 1691 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 E7EWF7 191 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 NRDCO43847 1150 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 SLU7O95391 586 aaKnown RBP10.2□□□□□ -0.78
TDP1-204ENST00000545686 PDIA3P30101 505 aaKnown RBP10.2□□□□□ -0.78
TDP1-204ENST00000545686 CASP7P55210 303 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 ARID5BQ14865 1188 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 CREBRFQ8IUR6 639 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 LRRC2Q9BYS8 371 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 FTOQ9C0B1 505 aaKnown RBP eCLIP10.2□□□□□ -0.78
TDP1-204ENST00000545686 L2HGDHQ9H9P8 463 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 POLR3EQ9NVU0 708 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 ERBB3P21860 1342 aa10.2□□□□□ -0.78
TDP1-204ENST00000545686 SNRPA1P09661 255 aaKnown RBP10.19□□□□□ -0.78
TDP1-204ENST00000545686 TPM4P67936 248 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 ZRSR1Q15695 479 aaKnown RBP10.19□□□□□ -0.78
TDP1-204ENST00000545686 UBE3BQ7Z3V4 1068 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 FILIP1Q7Z7B0 1213 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 NBPF11Q86T75 865 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.19□□□□□ -0.78
TDP1-204ENST00000545686 KIAA1468Q9P260 1216 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 PCDHA7Q9UN72 937 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 BRAPQ7Z569 592 aa10.19□□□□□ -0.78
TDP1-204ENST00000545686 CHD4Q14839 1912 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 CCP110O43303 1012 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 HSPD1P10809 573 aaKnown RBP10.18□□□□□ -0.78
TDP1-204ENST00000545686 KMT5BQ4FZB7 885 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 LINC00301Q8NCQ3 95 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 RAPGEF4Q8WZA2 1011 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 SDF4Q9BRK5 362 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 NDUFB9Q9Y6M9 179 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 MAST3O60307 1309 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 NEDD4P46934 1319 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 DHX16O60231 1041 aaKnown RBP10.18□□□□□ -0.78
TDP1-204ENST00000545686 PHKG2P15735 406 aa10.18□□□□□ -0.78
TDP1-204ENST00000545686 CCT2P78371 535 aaKnown RBP10.18□□□□□ -0.78
TDP1-204ENST00000545686 SLC39A6Q13433 755 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms