RNA–Protein interactions for RNA: ENST00000544610.1

CDCA3-209, Transcript of cell division cycle associated 3, humanhuman

TSL 3

Gene CDCA3, Length 624 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3-209ENST00000544610 GLIS2Q9BZE0 524 aaPredicted RBP8.38□□□□□ -1.07
CDCA3-209ENST00000544610 TRMT112Q9UI30 125 aaKnown RBP8.38□□□□□ -1.07
CDCA3-209ENST00000544610 SALL2Q9Y467 1007 aaPredicted RBP8.38□□□□□ -1.07
CDCA3-209ENST00000544610 CA12O43570 354 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 KRT24Q2M2I5 525 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.37□□□□□ -1.07
CDCA3-209ENST00000544610 TRPM4Q8TD43 1214 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 MBIPQ9NS73 344 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 CHPF2Q9P2E5 772 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 COL4A1P02462 1669 aa8.37□□□□□ -1.07
CDCA3-209ENST00000544610 KIF16BQ96L93 1317 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 PYGBP11216 843 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 RARSP54136 660 aaKnown RBP8.36□□□□□ -1.07
CDCA3-209ENST00000544610 PDE3AQ14432 1141 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 SF3B3Q15393 1217 aaKnown RBP8.36□□□□□ -1.07
CDCA3-209ENST00000544610 CDC37L1Q7L3B6 337 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 MICALL2Q8IY33 904 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 RASEFQ8IZ41 740 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 PLBD2Q8NHP8 589 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 ARHGAP45Q92619 1136 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 DPF2Q92785 391 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 ISCA1Q9BUE6 129 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 CNOT7Q9UIV1 285 aaKnown RBP8.36□□□□□ -1.07
CDCA3-209ENST00000544610 TSKSQ9UJT2 592 aa8.36□□□□□ -1.07
CDCA3-209ENST00000544610 SHTN1A0MZ66 631 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 H7C1D1 291 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 PSMD14O00487 310 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 IPO8O15397 1037 aaKnown RBP8.35□□□□□ -1.07
CDCA3-209ENST00000544610 VAMP4O75379 141 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 NEFLP07196 543 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 WASHC4Q2M389 1173 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 FAM161AQ3B820 660 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 HDGFL1Q5TGJ6 251 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 ANKRD13DQ6ZTN6 518 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 CELF1Q92879 486 aaKnown RBP8.35□□□□□ -1.07
CDCA3-209ENST00000544610 FAM89AQ96GI7 184 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 ZNF408Q9H9D4 720 aa8.35□□□□□ -1.07
CDCA3-209ENST00000544610 DBF4Q9UBU7 674 aaPredicted RBP8.35□□□□□ -1.07
CDCA3-209ENST00000544610 COLQQ9Y215 455 aaPredicted RBP8.35□□□□□ -1.07
CDCA3-209ENST00000544610 TAF1P21675 1872 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 RPS12P25398 132 aaKnown RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 RGS19P49795 217 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 EXOSC9Q06265 439 aaKnown RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 NOGQ13253 232 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 TRIM28Q13263 835 aaKnown RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 TWISTNBQ3B726 338 aaPredicted RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 USP48Q86UV5 1035 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 DBNDD1Q9H9R9 158 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 BMP2KQ9NSY1 1161 aaPredicted RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 POLLQ9UGP5 575 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 NSFL1CQ9UNZ2 370 aaKnown RBP8.34□□□□□ -1.07
CDCA3-209ENST00000544610 ZNF609O15014 1411 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 RTL9Q8NET4 1388 aa8.34□□□□□ -1.07
CDCA3-209ENST00000544610 CCDC85CA6NKD9 419 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 ATP5J2-PTCD1G3V325 749 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 SNPHO15079 494 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 ECE2O60344 883 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 EGFRP00533 1210 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 RRP1P56182 461 aaKnown RBP8.33□□□□□ -1.08
CDCA3-209ENST00000544610 HUNKP57058 714 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 GPSM2P81274 684 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 TBC1D10BQ4KMP7 808 aaPredicted RBP8.33□□□□□ -1.08
CDCA3-209ENST00000544610 CCDC30Q5VVM6 783 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 DLK2Q6UY11 383 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 SAMD7Q7Z3H4 446 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 TBC1D16Q8TBP0 767 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 TSR2Q969E8 191 aaKnown RBP8.33□□□□□ -1.08
CDCA3-209ENST00000544610 EYA3Q99504 573 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 MCOLN1Q9GZU1 580 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 HYPKQ9NX55 129 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 PODXL2Q9NZ53 605 aa8.33□□□□□ -1.08
CDCA3-209ENST00000544610 LAS1LQ9Y4W2 734 aaKnown RBP8.33□□□□□ -1.08
CDCA3-209ENST00000544610 PTPRCP08575 1304 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 FAM155AB1AL88 458 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 ADM5C9JUS6 153 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 C6orf229H3BNL8 230 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 IRS4O14654 1257 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 RIMBP2O15034 1052 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 SLC34A2O95436 690 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 MNX1P50219 401 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 RPS8P62241 208 aaKnown RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 MLLT1Q03111 559 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 RTL5Q5HYW3 569 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 RGMBQ6NW40 437 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 KRT26Q7Z3Y9 468 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 ZBTB38Q8NAP3 1195 aaPredicted RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 ZIC5Q96T25 663 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 CHMP4BQ9H444 224 aaKnown RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 KCNQ5Q9NR82 932 aa8.32□□□□□ -1.08
CDCA3-209ENST00000544610 SUPT16HQ9Y5B9 1047 aaKnown RBP8.32□□□□□ -1.08
CDCA3-209ENST00000544610 VIL1P09327 827 aaKnown RBP8.31□□□□□ -1.08
CDCA3-209ENST00000544610 DOK7Q18PE1 504 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 KIF4BQ2VIQ3 1234 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 C2orf69Q8N8R5 385 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 C8orf58Q8NAV2 365 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 MARVELD3Q96A59 401 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 DCPSQ96C86 337 aaKnown RBP8.31□□□□□ -1.08
CDCA3-209ENST00000544610 GBA2Q9HCG7 927 aaPredicted RBP8.31□□□□□ -1.08
CDCA3-209ENST00000544610 SAGE1Q9NXZ1 904 aa8.31□□□□□ -1.08
CDCA3-209ENST00000544610 UFL1O94874 794 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms