RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 SBF1O95248 1867 aa5.66□□□□□ -1.5
SNHG1-220ENST00000544550 THSD7BQ9C0I4 1608 aa5.66□□□□□ -1.5
SNHG1-220ENST00000544550 RGPD2P0DJD1 1756 aa5.65□□□□□ -1.5
SNHG1-220ENST00000544550 GPR37L1O60883 481 aa5.65□□□□□ -1.5
SNHG1-220ENST00000544550 PTCD1O75127 700 aaKnown RBP5.65□□□□□ -1.5
SNHG1-220ENST00000544550 FMNL1O95466 1100 aaPredicted RBP5.65□□□□□ -1.5
SNHG1-220ENST00000544550 ABL2P42684 1182 aa5.65□□□□□ -1.5
SNHG1-220ENST00000544550 LCE2AQ5TA79 106 aaPredicted RBP5.65□□□□□ -1.5
SNHG1-220ENST00000544550 MAP1SQ66K74 1059 aaPredicted RBP5.65□□□□□ -1.5
SNHG1-220ENST00000544550 LYPD8Q6UX82 237 aa5.65□□□□□ -1.5
SNHG1-220ENST00000544550 BRIP1Q9BX63 1249 aa5.65□□□□□ -1.5
SNHG1-220ENST00000544550 ZNF330Q9Y3S2 320 aaPredicted RBP5.65□□□□□ -1.5
SNHG1-220ENST00000544550 SOS1Q07889 1333 aaPredicted RBP5.65□□□□□ -1.51
SNHG1-220ENST00000544550 WASHC2AQ641Q2 1341 aa5.65□□□□□ -1.51
SNHG1-220ENST00000544550 COL5A3P25940 1745 aaPredicted RBP5.65□□□□□ -1.51
SNHG1-220ENST00000544550 VIRMAQ69YN4 1812 aaKnown RBP5.64□□□□□ -1.51
SNHG1-220ENST00000544550 PPM1GO15355 546 aaPredicted RBP5.64□□□□□ -1.51
SNHG1-220ENST00000544550 GRM1Q13255 1194 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 IRF5Q13568 498 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 AMOTQ4VCS5 1084 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 PLEKHO1Q53GL0 409 aaPredicted RBP5.64□□□□□ -1.51
SNHG1-220ENST00000544550 STYK1Q6J9G0 422 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 CYP4F22Q6NT55 531 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 INTS5Q6P9B9 1019 aaKnown RBP5.64□□□□□ -1.51
SNHG1-220ENST00000544550 WWC1Q8IX03 1113 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 NBPF15Q8N660 670 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 EPS8L1Q8TE68 723 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 HHIPL1Q96JK4 782 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 EMILIN1Q9Y6C2 1016 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 TLL2Q9Y6L7 1015 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 COL15A1P39059 1388 aa5.64□□□□□ -1.51
SNHG1-220ENST00000544550 A0A087WZG4 1122 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 ST20-MTHFSA0A0A6YYL1 179 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 FAM181BA6NEQ2 426 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 NPHP1O15259 732 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 LMOD1P29536 600 aaPredicted RBP5.63□□□□□ -1.51
SNHG1-220ENST00000544550 MTHFSP49914 203 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 ST5P78524 1137 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 CCDC93Q567U6 631 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 C1orf141Q5JVX7 400 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 PRPF40BQ6NWY9 871 aaKnown RBP5.63□□□□□ -1.51
SNHG1-220ENST00000544550 HOMEZQ8IX15 550 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 GPC2Q8N158 579 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 MASTLQ96GX5 879 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 CARMIL3Q8ND23 1372 aa5.63□□□□□ -1.51
SNHG1-220ENST00000544550 NRXN2Q9P2S2 1712 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 DLEC1Q9Y238 1755 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 SCN4AP35499 1836 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 WIPF1O43516 503 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 JUNDP17535 347 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 SOX10P56693 466 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 FKBP4Q02790 459 aaKnown RBP eCLIP5.62□□□□□ -1.51
SNHG1-220ENST00000544550 NR6A1Q15406 480 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 MSS51Q4VC12 460 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 ZNF530Q6P9A1 599 aaPredicted RBP5.62□□□□□ -1.51
SNHG1-220ENST00000544550 RTKN2Q8IZC4 609 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 CCDC82Q8N4S0 544 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 FAM160A2Q8N612 972 aaPredicted RBP5.62□□□□□ -1.51
SNHG1-220ENST00000544550 NFATC2IPQ8NCF5 419 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 MTRQ99707 1265 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 RNF123Q5XPI4 1314 aa5.62□□□□□ -1.51
SNHG1-220ENST00000544550 FZD9O00144 591 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 AOC2O75106 756 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 WFS1O76024 890 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 F12P00748 615 aaPredicted RBP5.61□□□□□ -1.51
SNHG1-220ENST00000544550 CYP19A1P11511 503 aaPredicted RBP5.61□□□□□ -1.51
SNHG1-220ENST00000544550 EIF6P56537 245 aaKnown RBP5.61□□□□□ -1.51
SNHG1-220ENST00000544550 COPS2P61201 443 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR20EP86478 221 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR20CP86479 221 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR20DP86480 221 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR20BP86481 221 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR20AP86496 221 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 LTBP1Q14766 1721 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PTPRNQ16849 979 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 WASHC4Q2M389 1173 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 CDCA8Q53HL2 280 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 PRR5LQ6MZQ0 368 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 BICDL1Q6ZP65 573 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 USP50Q70EL3 339 aaPredicted RBP5.61□□□□□ -1.51
SNHG1-220ENST00000544550 NPM2Q86SE8 214 aaKnown RBP5.61□□□□□ -1.51
SNHG1-220ENST00000544550 DNAJC10Q8IXB1 793 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 ADAMTSL1Q8N6G6 1762 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 CNBD1Q8NA66 436 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 JDP2Q8WYK2 163 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 SPSB2Q99619 263 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 ARID3AQ99856 593 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 ZNF541Q9H0D2 1346 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 SAGE1Q9NXZ1 904 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 ZBTB1Q9Y2K1 713 aa5.61□□□□□ -1.51
SNHG1-220ENST00000544550 POM121CA8CG34 1229 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 DXOO77932 396 aaKnown RBP5.6□□□□□ -1.51
SNHG1-220ENST00000544550 STARD3NLO95772 234 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 SRGNP10124 158 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 IARSP41252 1262 aaKnown RBP5.6□□□□□ -1.51
SNHG1-220ENST00000544550 MMP16P51512 607 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 NOGQ13253 232 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 EIF4A2Q14240 407 aaKnown RBP5.6□□□□□ -1.51
SNHG1-220ENST00000544550 AKAP4Q5JQC9 854 aa5.6□□□□□ -1.51
SNHG1-220ENST00000544550 CST9Q5W186 159 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms