RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-215	ENST00000544504	TLL2	Q9Y6L7	1015 aa		11.73	□□□□□ -0.53
YBX3-215	ENST00000544504	DDX60	Q8IY21	1712 aa	Known RBP	11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	LMOD1	P29536	600 aa	Predicted RBP	11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	RFX5	P48382	616 aa	Predicted RBP	11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	PTPN12	Q05209	780 aa	Known RBP	11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	SYNE4	Q8N205	404 aa		11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	JDP2	Q8WYK2	163 aa		11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	EXOC6B	Q9Y2D4	811 aa		11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	LTBP1	Q14766	1721 aa		11.72	□□□□□ -0.53
YBX3-215	ENST00000544504	KLRG2	A4D1S0	409 aa	Predicted RBP	11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	EYA2	O00167	538 aa		11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	AOC2	O75106	756 aa		11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	ITGA6	P23229	1130 aa		11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	IGHMBP2	P38935	993 aa	Known RBP	11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	IL15	P40933	162 aa	Predicted RBP	11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	USP50	Q70EL3	339 aa	Predicted RBP	11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	HHIPL1	Q96JK4	782 aa		11.71	□□□□□ -0.53
YBX3-215	ENST00000544504	ABCC12	Q96J65	1359 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	EIF6	P56537	245 aa	Known RBP	11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	FMR1	Q06787	632 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	PRPF38B	Q5VTL8	546 aa	Known RBP	11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	OLFM4	Q6UX06	510 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	DDX46	Q7L014	1031 aa	Known RBP	11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	SAPCD2	Q86UD0	394 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	CLASRP	Q8N2M8	674 aa	Known RBP	11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	RHPN1	Q8TCX5	695 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	PSMD1	Q99460	953 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	MPHOSPH8	Q99549	860 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	GREM2	Q9H772	168 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	GJA3	Q9Y6H8	435 aa		11.7	□□□□□ -0.54
YBX3-215	ENST00000544504	TRAF5	O00463	557 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	ALDH1B1	P30837	517 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	SCNN1D	P51172	638 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	LDHAL6A	Q6ZMR3	332 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	ANKRD18A	Q8IVF6	992 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	RPGR	Q92834	1020 aa	Known RBP	11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	LNPK	Q9C0E8	428 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	GPR108	Q9NPR9	543 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	CNNM1	Q9NRU3	951 aa		11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	PA2G4	Q9UQ80	394 aa	Known RBP	11.69	□□□□□ -0.54
YBX3-215	ENST00000544504	MROH5	Q6ZUA9	1318 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	EPS15	P42566	896 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	CRY2	Q49AN0	593 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	TMC4	Q7Z404	712 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	RBM17	Q96I25	401 aa	Known RBP	11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	GPATCH3	Q96I76	525 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	SIL1	Q9H173	461 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	CEP126	Q9P2H0	1117 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	AKAP2	Q9Y2D5	859 aa		11.68	□□□□□ -0.54
YBX3-215	ENST00000544504	APBB1	O00213	710 aa		11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	HOXA10	P31260	410 aa	Predicted RBP	11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	CCDC85A	Q96PX6	553 aa	Predicted RBP	11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	CRAMP1	Q96RY5	1269 aa		11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	BSDC1	Q9NW68	430 aa	Predicted RBP	11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	PDE4DIP	Q5VU43	2346 aa		11.67	□□□□□ -0.54
YBX3-215	ENST00000544504	CACNA1S	Q13698	1873 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	BBOX1	O75936	387 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	SASH1	O94885	1247 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	CELF2	O95319	508 aa	Known RBP	11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	IFIT2	P09913	472 aa	Known RBP	11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	RPS8	P62241	208 aa	Known RBP	11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	GRAP	Q13588	217 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	GRIPAP1	Q4V328	841 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	METTL24	Q5JXM2	366 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	CC2D2B	Q6DHV5	1058 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	CIAPIN1	Q6FI81	312 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	ATG9A	Q7Z3C6	839 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	KLHDC4	Q8TBB5	520 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	GRAPL	Q8TC17	118 aa	Predicted RBP	11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	ZNF594	Q96JF6	807 aa	Predicted RBP	11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	RIPOR2	Q9Y4F9	1068 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	SNED1	Q8TER0	1413 aa		11.66	□□□□□ -0.54
YBX3-215	ENST00000544504	AOX1	Q06278	1338 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	RGS3	P49796	1198 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	SOX10	P56693	466 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	NOG	Q13253	232 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	ANKRD2	Q9GZV1	360 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	TMX4	Q9H1E5	349 aa	Predicted RBP	11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	IL1RAPL2	Q9NP60	686 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	SEC31B	Q9NQW1	1179 aa		11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	ADARB2	Q9NS39	739 aa	Known RBP	11.65	□□□□□ -0.54
YBX3-215	ENST00000544504	TTC41P	Q6P2S7	1318 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	ERC2	O15083	957 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	TFCP2	Q12800	502 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	LRRC24	Q50LG9	513 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	TNNI3K	Q59H18	835 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	C3orf67	Q6ZVT6	689 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	AACS	Q86V21	672 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	LARGE2	Q8N3Y3	721 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	OSBPL3	Q9H4L5	887 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	FPGT-TNNI3K	V9GXZ4	949 aa		11.64	□□□□□ -0.55
YBX3-215	ENST00000544504	COL4A5	P29400	1685 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	SMARCA5	O60264	1052 aa	Predicted RBP	11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	PDE8B	O95263	885 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	MX1	P20591	662 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	PUS3	Q9BZE2	481 aa	Known RBP	11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	SAGE1	Q9NXZ1	904 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	GPRC5D	Q9NZD1	345 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	STAP2	Q9UGK3	403 aa		11.63	□□□□□ -0.55
YBX3-215	ENST00000544504	IFIT1	P09914	478 aa	Known RBP	11.62	□□□□□ -0.55

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