RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	DOK7	Q18PE1	504 aa		12.48	□□□□□ -0.41
CPSF7-221	ENST00000543545	EAF2	Q96CJ1	260 aa	Predicted RBP	12.48	□□□□□ -0.41
CPSF7-221	ENST00000543545	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	12.48	□□□□□ -0.41
CPSF7-221	ENST00000543545	FRAT2	O75474	233 aa	Predicted RBP	12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	FGFR2	P21802	821 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	ADORA1	P30542	326 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	HIBADH	P31937	336 aa	Known RBP	12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	IARS	P41252	1262 aa	Known RBP	12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	GYG1	P46976	350 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	ZNF804A	Q7Z570	1209 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	NIM1K	Q8IY84	436 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	JDP2	Q8WYK2	163 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	XAGE2	Q96GT9	111 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	LNPK	Q9C0E8	428 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	GNL3L	Q9NVN8	582 aa	Known RBP	12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	LAMB2	P55268	1798 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	COL11A2	P13942	1736 aa	Predicted RBP	12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	COL4A1	P02462	1669 aa		12.47	□□□□□ -0.41
CPSF7-221	ENST00000543545	KIF13B	Q9NQT8	1826 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	LMNB1	P20700	586 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	BCAM	P50895	628 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	NUCB1	Q02818	461 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	KIAA2012	Q0VF49	1180 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	CCDC158	Q5M9N0	1113 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	TXNRD3	Q86VQ6	643 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	CHD1L	Q86WJ1	897 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	C16orf71	Q8IYS4	520 aa	Predicted RBP	12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	FAM84B	Q96KN1	310 aa	Predicted RBP	12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	DBNDD2	Q9BQY9	259 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	VPS33B	Q9H267	617 aa		12.46	□□□□□ -0.41
CPSF7-221	ENST00000543545	SLX4	Q8IY92	1834 aa		12.46	□□□□□ -0.42
CPSF7-221	ENST00000543545	LTBP3	Q9NS15	1303 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	TTC39A	Q5SRH9	613 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	C9orf131	Q5VYM1	1079 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	C15orf52	Q6ZUT6	534 aa	Known RBP	12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	FBXW7	Q969H0	707 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	GPATCH3	Q96I76	525 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	COA1	Q9GZY4	146 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	DBNDD1	Q9H9R9	158 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	TLR7	Q9NYK1	1049 aa	Known RBP	12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	RNF181	Q9P0P0	153 aa		12.45	□□□□□ -0.42
CPSF7-221	ENST00000543545	MED23	Q9ULK4	1368 aa		12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	ECE2	O60344	883 aa		12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	CCDC102B	Q68D86	513 aa		12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	FBXO33	Q7Z6M2	555 aa		12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	CD209	Q9NNX6	404 aa		12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	DBNL	Q9UJU6	430 aa	Known RBP	12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	12.44	□□□□□ -0.42
CPSF7-221	ENST00000543545	KDM2B	Q8NHM5	1336 aa		12.43	□□□□□ -0.42
CPSF7-221	ENST00000543545	MYH3	P11055	1940 aa		12.43	□□□□□ -0.42
CPSF7-221	ENST00000543545	PHKA1	P46020	1223 aa		12.43	□□□□□ -0.42
CPSF7-221	ENST00000543545	CHAF1A	Q13111	956 aa	Predicted RBP	12.43	□□□□□ -0.42
CPSF7-221	ENST00000543545	ZNRF3	Q9ULT6	936 aa		12.43	□□□□□ -0.42
CPSF7-221	ENST00000543545	KIAA1551	Q9HCM1	1747 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	UQCRFS1P1	P0C7P4	283 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	PRELP	P51888	382 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	EIF6	P56537	245 aa	Known RBP	12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	PODN	Q7Z5L7	613 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	ECHDC1	Q9NTX5	307 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	JAG2	Q9Y219	1238 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	ZNF609	O15014	1411 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	TAF1	P21675	1872 aa		12.42	□□□□□ -0.42
CPSF7-221	ENST00000543545	IRS2	Q9Y4H2	1338 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	RAD17	O75943	681 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	MX1	P20591	662 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	GTF2I	P78347	998 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	TDRD7	Q8NHU6	1098 aa	Known RBP	12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	SNED1	Q8TER0	1413 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	DENND2A	Q9ULE3	1009 aa		12.41	□□□□□ -0.42
CPSF7-221	ENST00000543545	USP17L3	A6NCW0	530 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	USP17L4	A6NCW7	530 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	ERC2	O15083	957 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	IL1R1	P14778	569 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	TSHZ3	Q63HK5	1081 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	TTLL5	Q6EMB2	1281 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	USP17L1	Q7RTZ2	530 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	BOLA2	Q9H3K6	86 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	KCNQ5	Q9NR82	932 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	SNRK	Q9NRH2	765 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	GJA3	Q9Y6H8	435 aa		12.4	□□□□□ -0.42
CPSF7-221	ENST00000543545	YDJC	A8MPS7	323 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	SEMA3E	O15041	775 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	RASGRF1	Q13972	1273 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	TNIP1	Q15025	636 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	CIAPIN1	Q6FI81	312 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	SPATA5	Q8NB90	893 aa		12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	DNAJC2	Q99543	621 aa	Known RBP	12.39	□□□□□ -0.43
CPSF7-221	ENST00000543545	DLEC1	Q9Y238	1755 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	FZD9	O00144	591 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	GLRX3	O76003	335 aa	Known RBP	12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	ATP5J	P18859	108 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	PDE4A	P27815	886 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	ARID4A	P29374	1257 aa	Predicted RBP	12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	RGS3	P49796	1198 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	PDE1A	P54750	535 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	CXCL9	Q07325	125 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	STRIP1	Q5VSL9	837 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	DPY19L2	Q6NUT2	758 aa		12.38	□□□□□ -0.43
CPSF7-221	ENST00000543545	PLEKHM2	Q8IWE5	1019 aa		12.38	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 151.9 ms