RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 DTWD1Q8N5C7 304 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 OSMRQ99650 979 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 LACRTQ9GZZ8 138 aa11.17□□□□□ -0.62
YBX3-210ENST00000540975 PEAR1Q5VY43 1037 aaPredicted RBP11.16□□□□□ -0.62
YBX3-210ENST00000540975 GALNT12Q8IXK2 581 aa11.16□□□□□ -0.62
YBX3-210ENST00000540975 FMR1NBQ8N0W7 255 aaPredicted RBP11.16□□□□□ -0.62
YBX3-210ENST00000540975 ALKBH8Q96BT7 664 aaKnown RBP11.16□□□□□ -0.62
YBX3-210ENST00000540975 PDE2AO00408 941 aaPredicted RBP11.15□□□□□ -0.62
YBX3-210ENST00000540975 CPNE3O75131 537 aaKnown RBP11.15□□□□□ -0.62
YBX3-210ENST00000540975 FBXO11Q86XK2 927 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 NXPE3Q969Y0 559 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 HHIPQ96QV1 700 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 ZKSCAN3Q9BRR0 538 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 ADAM19Q9H013 955 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 LATS2Q9NRM7 1088 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 PPME1Q9Y570 386 aa11.15□□□□□ -0.62
YBX3-210ENST00000540975 C1QTNF9BB2RNN3 333 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 EIF1AYO14602 144 aaKnown RBP11.14□□□□□ -0.63
YBX3-210ENST00000540975 ELNP15502 786 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 CDC27P30260 824 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 CD163Q86VB7 1156 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 TMEM102Q8N9M5 508 aaPredicted RBP11.14□□□□□ -0.63
YBX3-210ENST00000540975 MUC3BQ9H195 1237 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 DNAJC25Q9H1X3 360 aa11.14□□□□□ -0.63
YBX3-210ENST00000540975 SH2B1Q9NRF2 756 aaPredicted RBP11.14□□□□□ -0.63
YBX3-210ENST00000540975 DEAF1O75398 565 aaPredicted RBP11.13□□□□□ -0.63
YBX3-210ENST00000540975 PTPRAP18433 802 aa11.13□□□□□ -0.63
YBX3-210ENST00000540975 PLCB3Q01970 1234 aa11.13□□□□□ -0.63
YBX3-210ENST00000540975 DSC3Q14574 896 aa11.13□□□□□ -0.63
YBX3-210ENST00000540975 APBA3O96018 575 aa11.12□□□□□ -0.63
YBX3-210ENST00000540975 CHRNA4P43681 627 aa11.12□□□□□ -0.63
YBX3-210ENST00000540975 CSRNP1Q96S65 589 aa11.12□□□□□ -0.63
YBX3-210ENST00000540975 LINC01387J3KSC0 135 aa11.11□□□□□ -0.63
YBX3-210ENST00000540975 SELPP16109 830 aa11.11□□□□□ -0.63
YBX3-210ENST00000540975 SETDB1Q15047 1291 aa11.11□□□□□ -0.63
YBX3-210ENST00000540975 GPAT2Q6NUI2 795 aa11.11□□□□□ -0.63
YBX3-210ENST00000540975 SND1Q7KZF4 910 aaKnown RBP eCLIP11.11□□□□□ -0.63
YBX3-210ENST00000540975 ZSCAN29Q8IWY8 852 aaPredicted RBP11.11□□□□□ -0.63
YBX3-210ENST00000540975 A0A1W2PP55 124 aa11.1□□□□□ -0.63
YBX3-210ENST00000540975 TREHO43280 583 aa11.1□□□□□ -0.63
YBX3-210ENST00000540975 ASB16Q96NS5 453 aa11.1□□□□□ -0.63
YBX3-210ENST00000540975 NACC1Q96RE7 527 aa11.1□□□□□ -0.63
YBX3-210ENST00000540975 C9orf172C9J069 976 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 EPHA1P21709 976 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 CDC25BP30305 580 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 KIAA0319Q5VV43 1072 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 SHISA2Q6UWI4 295 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 CCDC74AQ96AQ1 378 aa11.09□□□□□ -0.63
YBX3-210ENST00000540975 LENG1Q96BZ8 264 aaPredicted RBP11.09□□□□□ -0.63
YBX3-210ENST00000540975 FAM177BA6PVY3 158 aa11.08□□□□□ -0.64
YBX3-210ENST00000540975 DLL1O00548 723 aa11.08□□□□□ -0.64
YBX3-210ENST00000540975 IGHA1P01876 353 aa11.08□□□□□ -0.64
YBX3-210ENST00000540975 TXNDC11Q6PKC3 985 aa11.08□□□□□ -0.64
YBX3-210ENST00000540975 MAP4K3Q8IVH8 894 aa11.08□□□□□ -0.64
YBX3-210ENST00000540975 BHLHE41Q9C0J9 482 aaPredicted RBP11.08□□□□□ -0.64
YBX3-210ENST00000540975 SRA1Q9HD15 236 aaKnown RBP11.08□□□□□ -0.64
YBX3-210ENST00000540975 IGF2-ASQ6U949 168 aa11.07□□□□□ -0.64
YBX3-210ENST00000540975 BSNDQ8WZ55 320 aa11.07□□□□□ -0.64
YBX3-210ENST00000540975 SOX13Q9UN79 622 aa11.07□□□□□ -0.64
YBX3-210ENST00000540975 MSTNO14793 375 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 CCNJLQ8IV13 435 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 HOMEZQ8IX15 550 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 GALNT11Q8NCW6 608 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 ASAP3Q8TDY4 903 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 TCF12Q99081 682 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 SPOCK3Q9BQ16 436 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 NPHS2Q9NP85 383 aa11.06□□□□□ -0.64
YBX3-210ENST00000540975 FSCN2O14926 492 aa11.05□□□□□ -0.64
YBX3-210ENST00000540975 CABP4P57796 275 aa11.05□□□□□ -0.64
YBX3-210ENST00000540975 FAM117BQ6P1L5 589 aa11.05□□□□□ -0.64
YBX3-210ENST00000540975 EPS8L3Q8TE67 593 aaKnown RBP11.05□□□□□ -0.64
YBX3-210ENST00000540975 GZF1Q9H116 711 aaPredicted RBP11.05□□□□□ -0.64
YBX3-210ENST00000540975 LIN7BQ9HAP6 207 aa11.05□□□□□ -0.64
YBX3-210ENST00000540975 METTL12A8MUP2 240 aa11.04□□□□□ -0.64
YBX3-210ENST00000540975 TM4SF5O14894 197 aa11.04□□□□□ -0.64
YBX3-210ENST00000540975 PROCP04070 461 aa11.04□□□□□ -0.64
YBX3-210ENST00000540975 NRG1Q02297 640 aaPredicted RBP11.04□□□□□ -0.64
YBX3-210ENST00000540975 VN1R5Q7Z5H4 357 aa11.04□□□□□ -0.64
YBX3-210ENST00000540975 H3BRJ5 948 aa11.03□□□□□ -0.64
YBX3-210ENST00000540975 ADGRE1Q14246 886 aa11.03□□□□□ -0.64
YBX3-210ENST00000540975 ENOX2Q16206 610 aaKnown RBP11.03□□□□□ -0.64
YBX3-210ENST00000540975 EHD4Q9H223 541 aa11.03□□□□□ -0.64
YBX3-210ENST00000540975 A0A096LPE4 126 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 A0A1W2PPZ6 126 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 GATA4P43694 442 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 GRIA4P48058 902 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 SPRED3Q2MJR0 410 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 KLHL23Q8NBE8 558 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 DCAF11Q8TEB1 546 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 KLHDC7BQ96G42 594 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 CARD10Q9BWT7 1032 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 SEC31BQ9NQW1 1179 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 USP21Q9UK80 565 aa11.02□□□□□ -0.65
YBX3-210ENST00000540975 PNMA6FA0A0J9YX94 578 aa11.01□□□□□ -0.65
YBX3-210ENST00000540975 SOX1O00570 391 aaPredicted RBP11.01□□□□□ -0.65
YBX3-210ENST00000540975 GADD45BO75293 160 aaPredicted RBP11.01□□□□□ -0.65
YBX3-210ENST00000540975 CD68P34810 354 aaPredicted RBP11.01□□□□□ -0.65
YBX3-210ENST00000540975 MAPK8P45983 427 aa11.01□□□□□ -0.65
YBX3-210ENST00000540975 PIP4K2BP78356 416 aa11.01□□□□□ -0.65
YBX3-210ENST00000540975 FMR1Q06787 632 aaKnown RBP eCLIP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms