RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 TMEM87AQ8NBN3 555 aa7.53□□□□□ -1.2
PRKDC-209ENST00000540819 GMLQ99445 158 aa7.53□□□□□ -1.2
PRKDC-209ENST00000540819 MYH16Q9H6N6 1097 aa7.53□□□□□ -1.2
PRKDC-209ENST00000540819 CAPN10Q9HC96 672 aa7.53□□□□□ -1.2
PRKDC-209ENST00000540819 ANO2Q9NQ90 1003 aa7.53□□□□□ -1.2
PRKDC-209ENST00000540819 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.53□□□□□ -1.22e-6■■■■■ 149.1
PRKDC-209ENST00000540819 PRMT3O60678 531 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 CLSTN1O94985 981 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 IDH3AP50213 366 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 ARHGAP4P98171 946 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 FKBP4Q02790 459 aaKnown RBP eCLIP7.52□□□□□ -1.21
PRKDC-209ENST00000540819 OCLNQ16625 522 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 MSL1Q68DK7 614 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 ELMSAN1Q6PJG2 1045 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 KRT25Q7Z3Z0 450 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 KCNB2Q92953 911 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 RNF34Q969K3 372 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 GPATCH3Q96I76 525 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 SPACA7Q96KW9 195 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 BRINP2Q9C0B6 783 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 KLK14Q9P0G3 267 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 DMGDHQ9UI17 866 aaKnown RBP7.52□□□□□ -1.21
PRKDC-209ENST00000540819 SUGT1Q9Y2Z0 365 aa7.52□□□□□ -1.21
PRKDC-209ENST00000540819 MAP3K6O95382 1288 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 P4HBP07237 508 aaKnown RBP7.51□□□□□ -1.21
PRKDC-209ENST00000540819 IBSPP21815 317 aaPredicted RBP7.51□□□□□ -1.21
PRKDC-209ENST00000540819 ARSDP51689 593 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 RBL2Q08999 1139 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 FOXD4L6Q3SYB3 417 aaPredicted RBP7.51□□□□□ -1.21
PRKDC-209ENST00000540819 FOXD4L3Q6VB84 417 aaPredicted RBP7.51□□□□□ -1.21
PRKDC-209ENST00000540819 TICAM2Q86XR7 235 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 DTWD1Q8N5C7 304 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 C11orf16Q9NQ32 467 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 FRRS1LQ9P0K9 344 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 BCS1LQ9Y276 419 aa7.51□□□□□ -1.21
PRKDC-209ENST00000540819 RARAP10276 462 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 TARSP26639 723 aaKnown RBP7.5□□□□□ -1.21
PRKDC-209ENST00000540819 INPP5BP32019 993 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 XPCQ01831 940 aaPredicted RBP7.5□□□□□ -1.21
PRKDC-209ENST00000540819 DGKZQ13574 1117 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 DHX32Q7L7V1 743 aaKnown RBP7.5□□□□□ -1.21
PRKDC-209ENST00000540819 WFDC8Q8IUA0 241 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 GTF3C2Q8WUA4 911 aaPredicted RBP7.5□□□□□ -1.21
PRKDC-209ENST00000540819 KRTAP4-8Q9BYQ9 185 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 NAGPAQ9UK23 515 aa7.5□□□□□ -1.21
PRKDC-209ENST00000540819 TPD52L2O43399 206 aaKnown RBP7.49□□□□□ -1.21
PRKDC-209ENST00000540819 SASH3O75995 380 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 MICAL2O94851 1124 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 FANCCQ00597 558 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 C11orf91Q3C1V1 193 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 FBXO11Q86XK2 927 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 TRPM4Q8TD43 1214 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 RBCK1Q9BYM8 510 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 PIF1Q9H611 641 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 MRS2Q9HD23 443 aa7.49□□□□□ -1.21
PRKDC-209ENST00000540819 PERM1Q5SV97 790 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 GORABQ5T7V8 394 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 NLGN1Q8N2Q7 840 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 ZCRB1Q8TBF4 217 aaKnown RBP7.48□□□□□ -1.21
PRKDC-209ENST00000540819 ZNF526Q8TF50 670 aaPredicted RBP7.48□□□□□ -1.21
PRKDC-209ENST00000540819 WFDC12Q8WWY7 111 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 IFT43Q96FT9 208 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 LPIN3Q9BQK8 851 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 ZSWIM4Q9H7M6 989 aa7.48□□□□□ -1.21
PRKDC-209ENST00000540819 BCCIPQ9P287 314 aaKnown RBP eCLIP7.48□□□□□ -1.21
PRKDC-209ENST00000540819 ZBTB42B2RXF5 422 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 FOXO3O43524 673 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 ANAPC15P60006 121 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 MLLT1Q03111 559 aaPredicted RBP7.47□□□□□ -1.21
PRKDC-209ENST00000540819 FMR1Q06787 632 aaKnown RBP eCLIP7.47□□□□□ -1.211e-7■■■□□ 16.2
PRKDC-209ENST00000540819 IGF2-ASQ6U949 168 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 PMFBP1Q8TBY8 1022 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 TTC9Q92623 222 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 PRIMPOLQ96LW4 560 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 ZFATQ9P243 1243 aa7.47□□□□□ -1.21
PRKDC-209ENST00000540819 NOP58Q9Y2X3 529 aaKnown RBP7.47□□□□□ -1.21
PRKDC-209ENST00000540819 SORBS3O60504 671 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 PRPF40AO75400 957 aaKnown RBP7.46□□□□□ -1.22
PRKDC-209ENST00000540819 ZNF76P36508 570 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 IREB2P48200 963 aaKnown RBP7.46□□□□□ -1.22
PRKDC-209ENST00000540819 GPLD1P80108 840 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 LRP8Q14114 963 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 ZNF746Q6NUN9 644 aaPredicted RBP7.46□□□□□ -1.22
PRKDC-209ENST00000540819 ILDR2Q71H61 639 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 TMC7Q7Z402 723 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 TMC4Q7Z404 712 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 SLC52A1Q9NWF4 448 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 KLHL42Q9P2K6 505 aa7.46□□□□□ -1.22
PRKDC-209ENST00000540819 TREHO43280 583 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 EIF2AK2P19525 551 aaKnown RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 WEE1P30291 646 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 DNAJA1P31689 397 aaKnown RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 TCEAL1Q15170 157 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 GRIK5Q16478 980 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 RNF187Q5TA31 235 aaPredicted RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 HFE2Q6ZVN8 426 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 CMTR1Q8N1G2 835 aaKnown RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 SMG9Q9H0W8 520 aaKnown RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 OSBPL2Q9H1P3 480 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 ACBD3Q9H3P7 528 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms